Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1107
         (569 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.3  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   5.3  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 250  NEATMRKGKEPWHAMVKEILHKKT----GHRETINADHRLKNLHDRYIEASIRLKELHED 417
            +E  ++K K+  ++M  E+   ++    G+ E    +     L +   E  + +++ HE 
Sbjct: 926  SERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKAHEG 985

Query: 418  KDGLRKEEIS 447
               ++KE ++
Sbjct: 986  SSSIKKEIVA 995


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 222 LKMETILEQQRSYHEERERTMARNGQ 299
           LK  TIL + R Y  +R RT A  G+
Sbjct: 263 LKHATILSELRDYLAQRNRTPAPVGR 288


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,157
Number of Sequences: 2352
Number of extensions: 10190
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53824896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)