Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1107
(569 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60 pr... 130 3e-30
U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein. 130 3e-30
BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a, sub... 130 3e-30
BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a, sub... 130 3e-30
AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a, sub... 130 3e-30
AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a, sub... 130 3e-30
L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein. 31 2.9
AF000996-1|AAC51843.1| 1079|Homo sapiens ubiquitous TPR motif, Y... 29 8.7
AF000995-1|AAC51842.1| 1240|Homo sapiens ubiquitous TPR motif, Y... 29 8.7
AF000994-1|AAC51841.1| 1347|Homo sapiens ubiquitous TPR motif, Y... 29 8.7
>X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60
protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a,
subunit 3 variant protein.
Length = 501
Score = 130 bits (314), Expect = 3e-30
Identities = 58/87 (66%), Positives = 74/87 (85%)
Frame = +1
Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEF 471
M KE+L KK+ R+ IN+DHR + + DRY+E S L++L++DKDGLRKEE++A+SGP+EF
Sbjct: 22 MAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEF 81
Query: 472 QEFYSRLKQIKEFHRKHPNEISVPMSV 552
EFY+RLKQIKEFHRKHPNEI VPMSV
Sbjct: 82 AEFYNRLKQIKEFHRKHPNEICVPMSV 108
Score = 37.5 bits (83), Expect = 0.033
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 228 METILEQQRSYHEERERTM 284
METILEQQR YHEE+ER M
Sbjct: 1 METILEQQRRYHEEKERLM 19
>L09190-1|AAA65582.1| 1898|Homo sapiens trichohyalin protein.
Length = 1898
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 298 KEILHKKTGHRETINADHRLKNLHDRYI---EASIRLKE---LHEDKDGLRKEEISALSG 459
+E+LH++ G R+ + + RL+ +R E +RL+E L +D+D +EE LS
Sbjct: 1323 EELLHQEQG-RKFLEEEQRLREERERKFLKEEQQLRLEEREQLRQDRDRKFREEEQQLSR 1381
Query: 460 PHEFQEFYSRLKQIKEFHRK 519
++F +Q++ R+
Sbjct: 1382 QERDRKFREEEQQVRRQERE 1401
>AF000996-1|AAC51843.1| 1079|Homo sapiens ubiquitous TPR motif, Y
isoform protein.
Length = 1079
Score = 29.5 bits (63), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYS 486
K+L GL K + S LSGP+E Q +S
Sbjct: 583 KQLSNSAQGLHKSQSSCLSGPNEEQPLFS 611
>AF000995-1|AAC51842.1| 1240|Homo sapiens ubiquitous TPR motif, Y
isoform protein.
Length = 1240
Score = 29.5 bits (63), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYS 486
K+L GL K + S LSGP+E Q +S
Sbjct: 583 KQLSNSAQGLHKSQSSCLSGPNEEQPLFS 611
>AF000994-1|AAC51841.1| 1347|Homo sapiens ubiquitous TPR motif, Y
isoform protein.
Length = 1347
Score = 29.5 bits (63), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 400 KELHEDKDGLRKEEISALSGPHEFQEFYS 486
K+L GL K + S LSGP+E Q +S
Sbjct: 583 KQLSNSAQGLHKSQSSCLSGPNEEQPLFS 611
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,619,345
Number of Sequences: 237096
Number of extensions: 1319098
Number of successful extensions: 2890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2890
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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