Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1107
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.7  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.9  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 419 KMDYEK--KKYQHCQDHMSSRSSIRDLSKLKSFIENIQMK 532
           K+D E+  +   +C+D   S S  +    L+ FI+N  MK
Sbjct: 90  KLDSEQVNRLVNNCKDITESNSCKKSSKLLQCFIDNNLMK 129


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 419 KMDYEKKKYQHCQDHMSSRSSIRDLSKLKSFIENIQMKYLY 541
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 419 KMDYEKKKYQHCQDHMSSRSSIRDLSKLKSFIENIQMKYLY 541
           K + E +KY+      S   + R+ SK    I ++   Y Y
Sbjct: 51  KNEREYRKYRETSKERSQDRTERETSKEPKIISSLSNNYKY 91


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 376 YIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHR 516
           Y E   R ++LH +K+ L +E  S        +   +  K  KE+ +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRK 58


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 376 YIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHR 516
           Y E   R ++LH +K+ L +E  S        +   +  K  KE+ +
Sbjct: 12  YKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRK 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,788
Number of Sequences: 438
Number of extensions: 2845
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)