Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1107
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06160.1 68418.m00687 splicing factor-related contains some s...    60   1e-09
At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)...    30   1.2  
At2g14450.1 68415.m01617 hypothetical protein includes At5g34960...    29   2.2  
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    29   2.9  
At1g47900.1 68414.m05334 expressed protein                             29   2.9  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    28   3.8  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    28   5.0  
At2g34780.1 68415.m04270 expressed protein                             28   5.0  
At2g01800.1 68415.m00110 COP1-interacting protein-related simila...    28   5.0  
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    27   6.7  
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    27   6.7  
At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    27   8.8  
At1g10180.1 68414.m01148 expressed protein                             27   8.8  

>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 27/84 (32%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +1

Query: 292 MVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISAL-----S 456
           +V+++  +    ++ +   HR++++ +  +  + +L E +EDKDG   +EI+AL     +
Sbjct: 23  VVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTAT 82

Query: 457 GPHEFQEFYSRLKQIKEFHRKHPN 528
           G + F EFY RLK+I+E+H++HP+
Sbjct: 83  GTNVFSEFYDRLKEIREYHKRHPS 106


>At5g09590.1 68418.m01110 heat shock protein 70 / HSP70 (HSC70-5)
           identical to heat shock protein 70 [Arabidopsis
           thaliana] GI:6746590
          Length = 682

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 379 IEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEIS 537
           I+  +R  ELH  KD  RKE I   +        YS  K + E+  K P+EI+
Sbjct: 561 IQKMVREAELHAQKDKERKELIDTKNTAD--TTIYSIEKSLGEYREKIPSEIA 611


>At2g14450.1 68415.m01617 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 544

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 229 WKQF*SNNEATMRKGKEPWHAMVKEILHKKTGHR 330
           WKQ+ SN   T+  GK+  HA+VK+ L  K  H+
Sbjct: 28  WKQYTSNTGETIELGKK-MHAIVKKELVSKFVHK 60


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 355 LKNLHDRYIEASIR---LKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHP 525
           L   H+R +   +    LKE+  ++  L+   +SA     +FQE++S    +K   R HP
Sbjct: 190 LDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHP 249

Query: 526 NEI 534
            EI
Sbjct: 250 VEI 252


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +1

Query: 253  EATMRKGKEPWHAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELHE-DKDGL 429
            E  + + KE    +  E+  +K  H+E I   H L+    R+   S+  ++  E D    
Sbjct: 863  EIDVNQLKEKIQKLENELEDEKCNHQEAILRCHELEEHIQRHRNTSLVAEDDEEADIKSK 922

Query: 430  RKEEISALSGP-HEFQEFYSRL-KQIKEFHRKHPNEISVPMS 549
            ++ E+SA +    E QE    L KQ+K F R  P ++  P +
Sbjct: 923  QERELSAAAEKLAECQETIFVLGKQLKSF-RPQPEQMRSPQT 963


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 337 INADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQI 501
           +N  +R+   + +YI   +R+  + ED + +R  ++S  S      + Y R+  +
Sbjct: 384 VNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSV 438


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 355 LKNLHDRYIEASIR---LKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHP 525
           L   H+R +   +    LKE+ +++  L+   +SA     +FQ+++S    +K   R HP
Sbjct: 186 LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHP 245

Query: 526 NEI 534
            EI
Sbjct: 246 VEI 248


>At2g34780.1 68415.m04270 expressed protein
          Length = 1297

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 382 EASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIK 504
           +AS R KE++E +D L+KE + A S   E +  +  L + K
Sbjct: 114 QASGREKEINELRDLLKKETLRADSSEEEREHAFKELNKAK 154


>At2g01800.1 68415.m00110 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 304

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 328 RETINADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISAL 453
           +E  NAD  + +  D+ +E    L ELH+  D   KEEI  L
Sbjct: 199 KEVTNADLVMSD-QDKDLEKDNLLAELHQTTDDAEKEEIIGL 239


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 340 NADHRLKNLHDRYIEASIRLKELHEDKDGLRKEEISALSG 459
           N  +RLK L  +Y + S++LK   E+K+ + +     L+G
Sbjct: 270 NKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTG 309


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 336 SLPMPSFFVKNFFDHCVPWFFPFPHGSFVVA 244
           S+ MP        D  VPW+FP P  S  VA
Sbjct: 363 SIDMPIKANTKHMDDLVPWYFPLPVDSCSVA 393


>At2g27170.1 68415.m06029 structural maintenance of chromosomes
           (SMC) family protein similar to basement
           membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus] GI:1785540; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain. No suitalble
           start codon was identified.
          Length = 1207

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 379 IEASIRLKELHEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 507
           +E +I  KELH+ ++ L + E++      E  + Y R+++ ++
Sbjct: 223 LEYTIYDKELHDAREKLEQVEVARTKASEESTKMYDRVEKAQD 265


>At1g10180.1 68414.m01148 expressed protein
          Length = 769

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 352 RLKNLHDRYIEASIRLKELHEDKDGL 429
           R+  L+D+YI+  I+    H D+DGL
Sbjct: 424 RILQLYDKYIDFLIKALPGHSDEDGL 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,875
Number of Sequences: 28952
Number of extensions: 208259
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)