Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1098
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    77   1e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    77   1e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    77   1e-14
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   3.3  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.3  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U53149-1|AAD31546.1|  328|Caenorhabditis elegans Prion-like-(q/n...    27   7.7  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    27   7.7  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +2

Query: 182 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 361
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 362 YAILGFALSE 391
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +2

Query: 182 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 361
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 362 YAILGFALSE 391
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +2

Query: 182 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 361
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 362 YAILGFALSE 391
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 298 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 134
           CS+ + S    SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355

Query: 133 CCKWSHQC 110
           C K    C
Sbjct: 356 CPKACGHC 363


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 493 FSVYYLEWTAMESN-VWKPHPHSDARTDVCLHLQ 591
           F  + L+WT ++ N +WKP P  +   D  LH++
Sbjct: 179 FWFFDLQWTEIQENGIWKPPPGCENFNDHNLHIE 212


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 479 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 565
           P + VSVY I    PWN +F    ++V Q
Sbjct: 29  PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 109 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 198
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 49  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 174
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 154 HLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRT 11
           ++C  G CC  ++    +  G P   G  S G Q F  +  G R QR+
Sbjct: 103 YICSNGACCPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRS 150


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = -2

Query: 403  QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 227
            Q+ S + G   +G   + L   G  G   D+  + CS  S G + S  C C       + 
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568

Query: 226  VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 110
               +    G  GP C E CR  RY     G  C+   QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = -2

Query: 403  QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 227
            Q+ S + G   +G   + L   G  G   D+  + CS  S G + S  C C       + 
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568

Query: 226  VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQC 110
               +    G  GP C E CR  RY     G  C+   QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 435 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 307
           KSSR  I  ++  I     KP    E N C+ + FLA PM  E
Sbjct: 21  KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = -2

Query: 469 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 314
           V+    +S E E+++ERH  +   ++T S+R   T +    + +++  +  +A       
Sbjct: 9   VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66

Query: 313 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 227
               +  S T S T+Y   +C++ + + SR
Sbjct: 67  PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 LQLCTGATTCSSTHPYTDGTCCPYTA 177
           +Q C+G   C  TH   +  CCP  A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398


>U53149-1|AAD31546.1|  328|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 16
           protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 298 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELC 170
           C NT   TS S+C C   +   S    +     L  P C++ C
Sbjct: 51  CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = -2

Query: 598 RGTVGVNTHQSLHHYEGEVSKHSIPWLSTPDSIH*NLICRMAVVVFLKVNSLESEEQQER 419
           RG V    HQ  H ++   SKHS    +T DS+      +          S+E++E   R
Sbjct: 354 RGGVDGGGHQQQHQHQRRTSKHS----ATTDSVESTASTQSGERTESSTQSIEADEDIAR 409

Query: 418 HHKTEQTHSLRQGETQNGV*EQ 353
               +     R+ ET+  V E+
Sbjct: 410 ELDAQLIEEARR-ETEKRVKEE 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,212
Number of Sequences: 27780
Number of extensions: 314843
Number of successful extensions: 1279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)