Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1097
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    27   3.5  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   8.1  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   8.1  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 540 VNNRDLFDSLPDVQFLTQRRDQLVSGGLV*SAHNLHNQARWTNEEALCGS 391
           + N  + +SL    F+    D+L+  G   S  N+H     T    LC S
Sbjct: 178 LQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFS 227


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 567 MNEMNAAAIVNNRDLFDSLPDVQFL 493
           +N+  AAAI  N  LF+S   +QFL
Sbjct: 123 LNQSLAAAIAYNWSLFNSFSKIQFL 147


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 239 YVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPGLLYH 352
           Y PHGV+ G +      A + ++R   H +  P L  H
Sbjct: 217 YAPHGVNMGTNMGANMGANMNAIRGGLHSSISPNLGDH 254


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 198 PYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIPISTRDSQ 377
           P+   K +     C+F ++ V+AATS+ G      +YV I ++   +   TIP  TR+++
Sbjct: 165 PFTYGKFAPDSKECLFGVSGVIAATSLKGITSTKNRYV-IRSLNVDETGKTIPNITRENR 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,997
Number of Sequences: 5004
Number of extensions: 52166
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)