Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1097
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           25   3.1  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   3.1  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   3.1  
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    24   4.1  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.1  
AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    24   5.4  
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   9.5  

>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 618 REATVRVDDASC-ISLEIMNEMNAAAIVNNRDLFDSLPDVQFLT 490
           RE    + +  C ++L+   EM AAA  ++ +    LPD Q +T
Sbjct: 207 REIVRDIKEKLCYVALDFEQEMQAAAASSSSEKSYELPDGQVIT 250


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 612 ATVRVDDASCISLEIMNEMNAAAIVNNRDLFDSLPDVQFLTQR 484
           +T  +  +    L  + E N ++  +++DL   L ++QF+T R
Sbjct: 398 STTAIGGSVFTRLTTVEEQNVSSGCSHKDLHHILKELQFITNR 440


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 612 ATVRVDDASCISLEIMNEMNAAAIVNNRDLFDSLPDVQFLTQR 484
           +T  +  +    L  + E N ++  +++DL   L ++QF+T R
Sbjct: 398 STTAIGGSVFTRLTTVEEQNVSSGCSHKDLHHILKELQFITNR 440


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 439  SAQSGSLDQRRGIVRKFGSINCESLVEMGMVQKPW 335
            S +  S+D  +GI+R  G+++ E   E  +  + W
Sbjct: 1104 SKEKFSIDPEKGILRVAGALDREETAEYMLAVEAW 1138


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 482 RRCVRNWTSGRLSKRSLLLTMAAAFISF 565
           R  +RN +  ++SKR LL  +AA+ I +
Sbjct: 772 RGIMRNHSGPQVSKRKLLAAVAASIIRY 799


>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 179 YAQHRGPLHHEEAFRYYAGVYVPHGVSGGRDQHC 280
           YA H  P H  E  +Y    + P  V+  RD +C
Sbjct: 404 YAMHHDPAHFPEPEQYRPERFSPDEVA-RRDPYC 436


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 448 CSQSAQSGSLDQRRGIVRKFGSINCESLVEMGMVQKP 338
           C+ S +       R + R+FGSI    ++   M Q P
Sbjct: 269 CNLSVRKVLYQSHRKMCRQFGSIKPTPMLNRSMSQTP 305


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,199
Number of Sequences: 2352
Number of extensions: 14860
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)