Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1097
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-2|AAM51521.1|  321|Caenorhabditis elegans Hypothetical pr...    41   0.001
U39742-1|AAK39198.1|  322|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    29   3.3  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    29   3.3  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      29   4.3  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL032633-1|CAA21594.1|  430|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U39742-2|AAM51521.1|  321|Caenorhabditis elegans Hypothetical
           protein C25F6.7b protein.
          Length = 321

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +1

Query: 496 ELDIGETVEKISV--IDNGRRIHFIHDFQTNTTGIIDS--DRCFTMELQPELVLLPGMLA 663
           E++  ++ EKI V    + R   F+HDF+ N T I+D+  +RCF  EL    +  P ML 
Sbjct: 170 EINANDSYEKIDVPKFGSNRPAIFLHDFKQNLTAIVDTVGNRCFVKELDRTKIRNPRMLM 229

Query: 664 SGLQRGD 684
             L+  D
Sbjct: 230 EMLRNID 236


>U39742-1|AAK39198.1|  322|Caenorhabditis elegans Hypothetical
           protein C25F6.7a protein.
          Length = 322

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +1

Query: 496 ELDIGETVEKISV--IDNGRRIHFIHDFQTNTTGIIDS--DRCFTMELQPELVLLPGMLA 663
           E++  ++ EKI V    + R   F+HDF+ N T I+D+  +RCF  EL    +  P ML 
Sbjct: 171 EINANDSYEKIDVPKFGSNRPAIFLHDFKQNLTAIVDTVGNRCFVKELDRTKIRNPRMLM 230

Query: 664 SGLQRGD 684
             L+  D
Sbjct: 231 EMLRNID 237


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 588 SCISLEIMNEMNAAAIVNNRDLFDSLPDVQFLTQR 484
           SCI + I +E+N  AI   +   DS  +V FL +R
Sbjct: 315 SCIKVSITDEVNVIAICTKQAFTDSTSNVDFLKRR 349


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 391 TSAQCLFVGPTSLIVQIVSTLDEAATDQLITALREELDIGETVEKISVI-DNGRR 552
           T A  + +    L+   + T+    +D+L+    + +D+   +EK+SVI DNGR+
Sbjct: 25  TVATLIAIIAVPLLCLHMQTVHSGLSDELLFCKSKNVDMRSEIEKLSVIRDNGRQ 79


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 EAIADQLCEDCKQQELIDMHNIEGPYIMRKRSATMLVCM 242
           EA   +  E  K+ ++  +HN+ GP+++R+  A +L  M
Sbjct: 804 EAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTGM 842


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 EAIADQLCEDCKQQELIDMHNIEGPYIMRKRSATMLVCM 242
           EA   +  E  K+ ++  +HN+ GP+++R+  A +L  M
Sbjct: 804 EAFTAEFNEISKEDQIEKLHNLLGPHMLRRLKADVLTGM 842


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 EAIADQLCEDCKQQELIDMHNIEGPYIMRKRSATMLVCM 242
           E+   +  E  K+ ++  +HN+ GP+++R+  A +L  M
Sbjct: 818 ESFTAEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGM 856


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 EAIADQLCEDCKQQELIDMHNIEGPYIMRKRSATMLVCM 242
           E+   +  E  K+ ++  +HN+ GP+++R+  A +L  M
Sbjct: 818 ESFTAEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGM 856


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 126 EAIADQLCEDCKQQELIDMHNIEGPYIMRKRSATMLVCM 242
           E+   +  E  K+ ++  +HN+ GP+++R+  A +L  M
Sbjct: 818 ESFTAEFSEISKEDQIEKLHNLLGPHMLRRLKADVLTGM 856


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -1

Query: 559 NECGGHCQ*QRSFRQSPRCPVPHAAP*SAGQWRPRLKCSQSAQSGSLDQRRGIVR 395
           ++C  H   +   R  P CPV        G W     CS S   GS  +RR +VR
Sbjct: 741 HQCSEHLMQELQCRLRP-CPVKLTC--QVGPWSRWSPCSVSCGEGSQTRRRRVVR 792


>AL032633-1|CAA21594.1|  430|Caenorhabditis elegans Hypothetical
           protein Y106G6A.1 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = -2

Query: 630 LELHREATVRVDDASCISLEIMNEMNAAAIVNNRDLFDSLPDVQFLTQRRDQLVSGGLV* 451
           L+ + E TVRV   + I++   +E+     +  + L DSLP+   L +   Q  +G L  
Sbjct: 78  LQKYEEDTVRVKTGNIITVSEPDEIEPEPNIVMKALMDSLPNTNDLDR---QSYAGTLAG 134

Query: 450 SAHNLHNQARWTNEE 406
            ++ L +QA   +E+
Sbjct: 135 RSYGLPSQASRYSEK 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,591
Number of Sequences: 27780
Number of extensions: 312390
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)