Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1097
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 633 GLELHREATVRVDDASCISLEIMNEMNAAAIVNNRDLFDS 514
           G  +H E +   D+  C  LE+    +  A  NN D  DS
Sbjct: 226 GNGVHEENSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDS 265


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 371  VPSRNGYGTEALVSSYGADSHVLTVQEH 288
            VP  N   T   VSS  ++ H   + EH
Sbjct: 1306 VPGNNLIATNTTVSSGSSEDHRRPLSEH 1333


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 168 PVVYNLHIIGRQWPQ 124
           P+ YNL ++   WP+
Sbjct: 210 PIYYNLTMVKLNWPK 224


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 88  PFSRSPVSTLTSLRPLP 138
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 88  PFSRSPVSTLTSLRPLP 138
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,007
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)