Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1097
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    25   4.5  
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR...    28   5.3  
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    28   7.0  
At2g25410.1 68415.m03043 hypothetical protein                          27   9.3  

>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 24.6 bits (51), Expect(2) = 4.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 460 PRLKCSQSAQSGSLDQRRGIVRKFGSINC 374
           PR   S  AQ  SL  R G   KFG  +C
Sbjct: 176 PRCPVSHPAQPHSLSPRFGGNTKFGCFSC 204



 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 517 QSPRCPVPHAA 485
           ++PRCPV H A
Sbjct: 174 ENPRCPVSHPA 184


>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 437 CTIRLVGPTKRHCAEVWFH*LRVPSRN 357
           C+IR  G  + HC E+ +H LRV S +
Sbjct: 896 CSIRTKGGVEVHCCELPYHFLRVRSEH 922


>At3g19670.1 68416.m02492 FF domain-containing protein / WW
            domain-containing protein weak similarity to
            huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
            GI:3341980; contains Pfam profiles PF01846: FF domain,
            PF00397: WW domain
          Length = 960

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 173  DRYAQHRGPLHHEE--AFRYYAGVYVPHGVS---GGRDQHCRWRALVPSVREN 316
            DR  +     HH++  A +Y   +  PHG      GRD H R R    SV+EN
Sbjct: 849  DRVRERDSDDHHKKGAAGKYNHDMNEPHGKERRRSGRDSHNRHRERHTSVKEN 901


>At2g25410.1 68415.m03043 hypothetical protein
          Length = 377

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 390 NFRTMPLRWSNEPDCADCEHFRRGR 464
           N R M L+W + PDC DCE     R
Sbjct: 190 NSRDMWLKWDS-PDCRDCERRTNSR 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,453
Number of Sequences: 28952
Number of extensions: 289791
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)