Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1092
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1406 + 26343915-26346032                                         30   1.1  
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153...    28   4.5  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     28   5.9  
08_01_0487 + 4272015-4272344                                           27   7.8  
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103...    27   7.8  

>07_03_1406 + 26343915-26346032
          Length = 705

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 11  RPSEPKPTSPARGAPCRPTNEALARRGRH 97
           RP  P   SPA  + C P   A ARRG H
Sbjct: 19  RPRLPPLASPATTSTCAPAPAATARRGSH 47


>01_01_0180 +
           1533219-1533536,1533658-1533825,1535404-1535475,
           1536174-1536179,1536228-1536440,1537434-1537700,
           1537947-1538267
          Length = 454

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 8   PRPSEPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSDH 142
           P P E +P+SP+    C   +    RRG   + VA + D +  DH
Sbjct: 6   PPPPEEEPSSPSLRLRCAVQHYEWGRRG-EASLVARLSDANADDH 49


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  RPTNEALARRGRHGTTVAYIVDDSGS 136
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


>08_01_0487 + 4272015-4272344
          Length = 109

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 20  EPKPTSPARGAPCRPTNEALARRGRHGTTVAYIV 121
           E +P     GAP RP   A  R GR G  V + V
Sbjct: 61  EMRPRGGGGGAPRRPAPPAGPREGRGGVVVVHAV 94


>04_01_0100 +
          1034057-1034308,1034962-1035078,1035152-1035382,
          1038200-1038455,1038551-1038807,1038978-1039250,
          1039617-1039898,1040045-1040165,1040351-1040520,
          1040613-1040711
          Length = 685

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 14 PSEPKPTSPARGAPCRPTNEALARR 88
          P++P  +SPA  +P RP+ E L  R
Sbjct: 13 PADPPDSSPAASSPPRPSPEELVAR 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,065
Number of Sequences: 37544
Number of extensions: 247837
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)