Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1091
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   0.79 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   0.79 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   7.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    20   9.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   9.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   9.7  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 249 F*ITLIGLF*STTATHLVSWF 311
           F + + GLF  TT T +V WF
Sbjct: 270 FTVKISGLFEITTITAMVMWF 290


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 0.79
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 249 F*ITLIGLF*STTATHLVSWF 311
           F + + GLF  TT T +V WF
Sbjct: 226 FTVKISGLFEITTITAMVMWF 246


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/46 (17%), Positives = 19/46 (41%)
 Frame = -2

Query: 347 FTARSQNTLQLQEPGNEMCRRCRSKQANQCYLKRESQSTQTNNSLD 210
           +  R +    + +     C+ CR ++     +KRE+   +   + D
Sbjct: 120 YACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKD 165



 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 225 KQ*LRLVTFQITLPEFFTLPVT 160
           KQ  +LV +   +P F +LP+T
Sbjct: 220 KQLFQLVQWAKLVPHFTSLPLT 241


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 207 VTFQITLPEFFTLPVTFVTSKQ 142
           + F + L  F  LPV  VTS++
Sbjct: 198 IVFGLCLTTFGLLPVNGVTSEK 219


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/34 (17%), Positives = 16/34 (47%)
 Frame = -2

Query: 341 ARSQNTLQLQEPGNEMCRRCRSKQANQCYLKRES 240
           A+ + +  + +     CR CR K+     + +++
Sbjct: 76  AKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDA 109


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/34 (17%), Positives = 16/34 (47%)
 Frame = -2

Query: 341 ARSQNTLQLQEPGNEMCRRCRSKQANQCYLKRES 240
           A+ + +  + +     CR CR K+     + +++
Sbjct: 76  AKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDA 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,293
Number of Sequences: 336
Number of extensions: 1784
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)