BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1091 (384 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces... 27 1.0 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.3 SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 25 5.4 SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 24 7.1 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 24 7.1 SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 24 7.1 SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 9.4 SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 24 9.4 >SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces pombe|chr 3|||Manual Length = 155 Score = 27.1 bits (57), Expect = 1.0 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 101 KRGERNICIYLKRTCLDVTNVTGRVKNS 184 KR + +C+Y + +C V G+V NS Sbjct: 65 KRSDDGLCVYSELSCTRCNEVIGKVYNS 92 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 26.6 bits (56), Expect = 1.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 37 SYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYEC 162 SYPNF+ +Q+YE +R S + +++ ++F C C Sbjct: 977 SYPNFANDKQQYE-KRFRQSQLSYNLGRLHIAGDYIFSCVGC 1017 >SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 378 Score = 24.6 bits (51), Expect = 5.4 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -2 Query: 329 NTLQLQEPGNEMCRRCRSKQANQCYLKRESQ 237 + + L P + C+ CRS + N C RE+Q Sbjct: 90 HVILLYTPECKECKFCRSGKTNLCSKIRETQ 120 >SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizosaccharomyces pombe|chr 2|||Manual Length = 1706 Score = 24.2 bits (50), Expect = 7.1 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = -3 Query: 166 SYIRNI*TSAF*VNTYVPFSSLLQKQICDESRIVALL--LKSLGRSRRHDVTSSLIL 2 S IR++ T +N + +L + ICDES++ +L + +L R + DV S ++ Sbjct: 438 STIRHVNTRESKINA-LSLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRISALI 493 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 24.2 bits (50), Expect = 7.1 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +1 Query: 61 RQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNWESEELW 186 R Y R+F ++ + M L TH++ CY+ N E +W Sbjct: 37 RSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTN---ESVW 75 >SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 395 Score = 24.2 bits (50), Expect = 7.1 Identities = 11/46 (23%), Positives = 19/46 (41%) Frame = +1 Query: 31 FYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNW 168 F+S+ +F + RYE ++ F R + H+ C W Sbjct: 64 FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKW 109 >SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1242 Score = 23.8 bits (49), Expect = 9.4 Identities = 18/75 (24%), Positives = 29/75 (38%) Frame = -3 Query: 376 SSYLVILKPNLQHVHRTPYNYKNQETRCVAVVDQNKPINVI*NVNRSLRRQTIA*TRDIP 197 SS V ++ N H Y + R VD+ I+ N + ++ + I Sbjct: 304 SSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIE 363 Query: 196 DNITRVLHSPSYIRN 152 + TRV H P + N Sbjct: 364 SDFTRVDHEPIIVNN 378 >SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1238 Score = 23.8 bits (49), Expect = 9.4 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 25 HVFYSYPNFSVARQRY-EIRRKFVSVKARRTEHMYLPKTHLFRCY 156 H+ +S+ F + + +IR V +ARRT + Y K+ C+ Sbjct: 1082 HLQHSHLPFKFTPESFIKIRNGNVKEEARRTRNAYTQKSGEVECF 1126 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,490,133 Number of Sequences: 5004 Number of extensions: 26956 Number of successful extensions: 73 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 126307516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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