Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1091
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces...    27   1.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   1.3  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   5.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   7.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   7.1  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    24   7.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   9.4  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   9.4  

>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 101 KRGERNICIYLKRTCLDVTNVTGRVKNS 184
           KR +  +C+Y + +C     V G+V NS
Sbjct: 65  KRSDDGLCVYSELSCTRCNEVIGKVYNS 92


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 37   SYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYEC 162
            SYPNF+  +Q+YE +R   S  +     +++   ++F C  C
Sbjct: 977  SYPNFANDKQQYE-KRFRQSQLSYNLGRLHIAGDYIFSCVGC 1017


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 329 NTLQLQEPGNEMCRRCRSKQANQCYLKRESQ 237
           + + L  P  + C+ CRS + N C   RE+Q
Sbjct: 90  HVILLYTPECKECKFCRSGKTNLCSKIRETQ 120


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 166 SYIRNI*TSAF*VNTYVPFSSLLQKQICDESRIVALL--LKSLGRSRRHDVTSSLIL 2
           S IR++ T    +N  +    +L + ICDES++  +L  + +L R +  DV  S ++
Sbjct: 438 STIRHVNTRESKINA-LSLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRISALI 493


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 61  RQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNWESEELW 186
           R  Y   R+F ++  +    M L  TH++ CY+ N   E +W
Sbjct: 37  RSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTN---ESVW 75


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 31  FYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNW 168
           F+S+ +F +   RYE ++ F     R      +   H+     C W
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKW 109


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = -3

Query: 376 SSYLVILKPNLQHVHRTPYNYKNQETRCVAVVDQNKPINVI*NVNRSLRRQTIA*TRDIP 197
           SS  V ++ N  H     Y  +    R    VD+   I+   N + ++    +     I 
Sbjct: 304 SSNSVPVEFNSLHSQNVDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIE 363

Query: 196 DNITRVLHSPSYIRN 152
            + TRV H P  + N
Sbjct: 364 SDFTRVDHEPIIVNN 378


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25   HVFYSYPNFSVARQRY-EIRRKFVSVKARRTEHMYLPKTHLFRCY 156
            H+ +S+  F    + + +IR   V  +ARRT + Y  K+    C+
Sbjct: 1082 HLQHSHLPFKFTPESFIKIRNGNVKEEARRTRNAYTQKSGEVECF 1126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,133
Number of Sequences: 5004
Number of extensions: 26956
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)