Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1091
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   3.8  
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187     27   6.7  
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    26   8.9  

>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 326 TLQLQEPGNEMCRRCRSKQANQ 261
           T QL+E  NE+ R CRS  +NQ
Sbjct: 273 THQLEEAVNEVMRLCRSSSSNQ 294


>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
          Length = 817

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 202 CHESKLLFVCVDCDSRFR*H*LACFDRQRRHI 297
           C E  L+ VCV+CD  F     A   + R HI
Sbjct: 98  CTERHLMMVCVECDMHFCIGRFAKKSKPRGHI 129


>12_01_0991 -
           10057736-10058249,10058412-10059241,10059266-10060633,
           10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +2

Query: 89  LFL*KRGERNICIYLKR---TCLDVTNVTGR---VKNSGNVIWNVTSLS 217
           L+L + G R    +L+R   T L+V +++G     K + N  WN+TSLS
Sbjct: 506 LYLKQCGLRKTVPFLRRSNITGLEVLDISGNRFHTKIAPNWFWNITSLS 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,079,831
Number of Sequences: 37544
Number of extensions: 157408
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)