Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1091
(384 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019) 32 0.18
SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9) 32 0.18
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 32 0.18
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.43
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 0.74
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.3
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.7
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09) 29 1.7
SB_9407| Best HMM Match : DCX (HMM E-Value=2.6) 29 1.7
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 27 4.0
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_26279| Best HMM Match : S-antigen (HMM E-Value=3) 27 5.2
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 27 6.9
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 9.2
>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
Length = 318
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 107 GERNICIYLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 229
GE N+ Y ++ C VT VT RVK+ G + + S C+S
Sbjct: 103 GEANMRFYGQQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143
>SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)
Length = 159
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 107 GERNICIYLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 229
GE N+ Y ++ C VT VT RVK+ G + + S C+S
Sbjct: 103 GEANMRFYGQQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 31.9 bits (69), Expect = 0.18
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +1
Query: 76 IRRKFVSVKARRTEHMYLPKTHLFRCYECNWE--SEELW*CYLECHESKLLFVCVDCDSR 249
+R ++ + R EH F C C + S++ C+L+ H +L + C CD R
Sbjct: 37 LRNEYALIGHNRIEHA----VRNFVCQHCGKKLASKKTLKCHLQHHTGELPYKCRFCDKR 92
Query: 250 FR*H*LACFDRQRRHI-SFPGSCSCKVFCERA 342
F + FD + RH P C V C +A
Sbjct: 93 FG-KSNSLFDHENRHTGELPFKC---VVCGKA 120
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 30.7 bits (66), Expect = 0.43
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 SVKARRTEHMYLPKTHLFRCYECNWE--SEELW*CYLECHESKLLFVCVDCDSRF 252
+V+ +R Y P + +C C+ E + C++ H + + C CD RF
Sbjct: 490 TVRVKREGDEYQPSNKMHKCETCDKEFTRRDALTCHIRIHTGERPYECRYCDKRF 544
>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 615
Score = 29.9 bits (64), Expect = 0.74
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 4 ESNLKSHHVFYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNW----- 168
+ NLK+H + +S + + ++F++ + HM++ K + YEC W
Sbjct: 507 QDNLKAHMMLHSRQGVVSCDKCH---KEFIN-QIYLKRHMHIHKEAKKKPYECQWCPKTY 562
Query: 169 ESEELW*CYLECHESKLLFVCVDCDSRF 252
E+ E +++ H FVC CD +F
Sbjct: 563 ENLEGLRRHIKQHVGDEKFVCEQCDKKF 590
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 82 RKFVSVKARRTEHMYLPKTHLFRCYEC--NWESEELW*CYLECHESKLLFVCVDCDSRF 252
R+F + +A + H F+C EC +SEE + ++ HE F C C F
Sbjct: 1066 RQFTTRRALNIHFRVHTEEHYFQCEECPRKCDSEETFLMHMRLHEGS--FKCPKCPMTF 1122
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 112 TEHMYLPK---THLFRCYECNWESEELW*C--YLECHESKLLFVCVDCDSRFR 255
T+HMY + T ++RC C+ +++ + H++ ++ C +CD +FR
Sbjct: 691 TDHMYSHEESGTKIYRCVLCDDVFDQIKELTKHQRTHKTDAVYKCQECDKKFR 743
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 46 NFSVARQ-RYEIRRKFVSVKARRTEHMYLPKTHLFRCYECN--WESEELW*CYLECHESK 216
NFS R +R+ K + + ++LP+ C EC ++S + H +
Sbjct: 153 NFSSGSNLRKHVRKHKPGYKPYKDKRVHLPRERKHECMECQKLFDSPNALEVHFRTHTGE 212
Query: 217 LLFVCVDCDSRF 252
++C C+ +F
Sbjct: 213 RPYLCEKCEWKF 224
>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
Length = 1069
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 113 RNICIYLKRTCLDVTNVTGRVKNSGNV 193
R +C YL+++C D +N R ++GNV
Sbjct: 458 RRMCFYLEKSCFDASNCDNRC-STGNV 483
>SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)
Length = 306
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 216 LRLVTFQITLPEFFTLPVTFVTSKQVRF 133
LR ++ + L E FT+PV+ V+S+Q F
Sbjct: 122 LRATSYNVKLTECFTVPVSVVSSEQPAF 149
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 353 T*FTARSQNTLQLQEPGNEMCRRCRSKQANQCYLKRESQST 231
T +T R QNT + C CR ++ +K+E+ T
Sbjct: 89 TNYTCRGQNTCAIDRNSRSRCPSCRFQKCLSTGMKKEAVQT 129
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 136 THLFRCYECN--WESEELW*CYLECHESKLLFVCVDCDSRFR*H*LACFDRQRRH 294
T +F C C+ ++ EE + E H + ++F C CD H R+ RH
Sbjct: 537 TFIF-CQNCHIMFDCEEDLAKHKETHTTNMIFKCEQCDEYMPSHSKLLIHRKERH 590
>SB_26279| Best HMM Match : S-antigen (HMM E-Value=3)
Length = 613
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 22 HHVFYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLP-KTHLFRCYECN 165
H+V S P+FS R F H+ LP TH +C + N
Sbjct: 21 HNVLTSCPDFSEYHARLPFHTHFTQCPDLNVYHVMLPFHTHFTQCPDLN 69
>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 412
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 320 QLQEPGNEMCRRCRSKQANQCYLKRESQ 237
QL EP M R+C++ +QC E Q
Sbjct: 297 QLAEPALAMERQCKANMGHQCLASMERQ 324
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 97 VKARRTEHMYLPKTHLFRCYECNWESEELW*CYLECHESKLLFVCVDCDSRFR 255
+K ++ H YLP + C+ +E + + H +K + C DC F+
Sbjct: 966 LKHTKSAHNYLPSDNCEVCHHTFSSAEHVSKHFWTAHVTKRPYKCQDCGYYFQ 1018
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,196
Number of Sequences: 59808
Number of extensions: 212768
Number of successful extensions: 543
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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