Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1091
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   8.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 236 TAIHVLDNIDWLVLIDNGDTS 298
           T ++++DN + L++  N D S
Sbjct: 200 TMVYMVDNKNTLIIYQNADDS 220


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 208 ESKLLFVCVDCDSRFR 255
           +S  L+VC  C+ R+R
Sbjct: 31  QSDTLYVCEFCNRRYR 46


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 67  RYEIRRKFVSVKARRT 114
           R+E R KFV V+ +++
Sbjct: 318 RWEFRGKFVGVRGKKS 333


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 310 SCSCKVFCERAVN 348
           S  CK FC+R  N
Sbjct: 75  SIICKCFCKRRTN 87


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 310 SCSCKVFCERAVN 348
           S  CK FC+R  N
Sbjct: 523 SIICKCFCKRRTN 535


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 107 GERNICIYLK 136
           G+RNICI +K
Sbjct: 305 GKRNICIAIK 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,054
Number of Sequences: 438
Number of extensions: 1988
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)