Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1091
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13630.1 68417.m02121 expressed protein contains Pfam profile... 28 2.5
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr... 28 2.5
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr... 28 2.5
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 28 2.5
At5g65830.1 68418.m08284 leucine-rich repeat family protein cont... 27 3.3
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi... 27 3.3
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ... 27 3.3
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 27 4.3
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 27 5.7
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 27 5.7
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 27 5.7
At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family pr... 27 5.7
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p... 26 7.5
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 26 9.9
At4g24790.1 68417.m03550 expressed protein ; expression supporte... 26 9.9
>At4g13630.1 68417.m02121 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 581
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Frame = -3
Query: 334 HRTPYNYKNQETRCVAV------VDQNKPINVI*NVN 242
HR+PY +KN C+ + D+N P+ V NVN
Sbjct: 149 HRSPYGFKNHYQSCLGLKSFEGSYDENDPLLVNSNVN 185
>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1009
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 131 LKRTCLDVTNVTGRVKNSGNVIWNVTSLS 217
L+ CLD N+TG++ +S + NVT L+
Sbjct: 240 LRELCLDRNNLTGKIPSSFGNLKNVTLLN 268
>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1045
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 131 LKRTCLDVTNVTGRVKNSGNVIWNVTSLS 217
L+ CLD N+TG++ +S + NVT L+
Sbjct: 240 LRELCLDRNNLTGKIPSSFGNLKNVTLLN 268
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +1
Query: 10 NLKSHHVFYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNWESEELW* 189
N + H F SYP+F R Y+ + P LF C +S E +
Sbjct: 68 NFFNFHPFNSYPHFPRTRTSYQQGESLLDYDHHNI--CKFPVVPLFWCNNKTPDSNE-FE 124
Query: 190 CYLECHESKL---LFVCVDCDSRF 252
C C ESK + C++C ++F
Sbjct: 125 CG-GCEESKTSRSYYACLECGNKF 147
>At5g65830.1 68418.m08284 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to receptor
protein kinase-like protein
Length = 279
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 193 NITRVLHSPSYIRNI*TSAF*VNTYVPFSSLLQKQICDESRIVALLLKSL 44
N+ + L P+ T +F +N FSS L IC+ RI L L +L
Sbjct: 41 NLRQSLEDPANNLRNWTKSFFINPCSGFSSYLHGVICNNGRIYKLSLTNL 90
>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 738
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +1
Query: 214 KLLFVCVDCDS------RFR*H*LACFDRQRRHISFPGSCSC 321
K L VCVDC S R + C D +R H GSCSC
Sbjct: 693 KNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSC 734
>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 787
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 115 PFSSLLQKQICDESRIVALLLKSLGRSRRH 26
PF+ L KQ+ DE + + L LK LG S ++
Sbjct: 317 PFNKYLVKQVVDECKGLPLSLKVLGASLKN 346
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 128 KYICSVLLAFTETNLRRISYRCLA 57
KY+ +LLA + L R S+RC A
Sbjct: 1633 KYVLELLLAIPKVTLARASFRCQA 1656
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 130 VNTYVPFSSLLQKQICDESRIVALLLKSLGRSRRHDV 20
+N+YVP+ K+I DE RI L+L SL R V
Sbjct: 176 LNSYVPYIESKAKEIRDERRI--LMLHSLNSLRWESV 210
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 130 VNTYVPFSSLLQKQICDESRIVALLLKSLGRSRRHDV 20
+N+YVP+ K+I DE RI L+L SL R V
Sbjct: 176 LNSYVPYIESKAKEIRDERRI--LMLHSLNSLRWESV 210
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 146 NKCVLGKYICSVLLAFTETNLRRISYRC 63
++C G +C VL A T N+ R YRC
Sbjct: 163 HQCPCGAGLCRVLTAKTGENVGRQFYRC 190
>At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 1021
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 149 DVTNVTGRVKNSG-NVIWNVTSLSYCLSA*TAI-HVLDNIDWLVLI 280
D+ + R+ S V+W ++S+ +CLS T VL I+ + LI
Sbjct: 582 DIKKTSNRIGLSPIGVVWTISSICHCLSGGTTFRQVLVKIETMKLI 627
>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
protein annotation temporarily based on supporting cDNA
gi|23452833|gb|AF543710.1|
Length = 533
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 40 YPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYE 159
+PN+ + +R +I+ F V + + +LPK F Y+
Sbjct: 275 FPNYESSVERDDIKDPFTEVSMFKKNYDHLPKDTYFGMYK 314
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 109 SSLLQKQICDESRIVALLLKSLG 41
+S++ + CD +R +AL+L+SLG
Sbjct: 262 TSMIFTRTCDGTRFLALVLRSLG 284
>At4g24790.1 68417.m03550 expressed protein ; expression supported
by MPSS
Length = 815
Score = 25.8 bits (54), Expect = 9.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = -3
Query: 208 RDIPDNITRVLHSPSYIRNI*TSAF*VNTYVPFSSLLQKQICDESRIV-----ALLLKSL 44
RD+ + + L+ PSY+R++ SA + P SS + I DE +++ LL SL
Sbjct: 324 RDVMETDSGKLNRPSYLRSLIKSA----SLPPVSSRFKVFIIDECQLLCQETWGTLLNSL 379
Query: 43 GRSRRHDV 20
+H V
Sbjct: 380 DNFSQHSV 387
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,675,419
Number of Sequences: 28952
Number of extensions: 138372
Number of successful extensions: 375
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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