Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1088
         (670 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    24   0.98 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.2  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   5.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   5.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.2  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 282 ISSRSDMVSIFWQQLNCSTNDKQTRVAVESVTGTFETVVHSGS 410
           +S  S+ +   W       N+KQ+   + + +  F  V HSGS
Sbjct: 112 LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGS 154


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 IELLPKNGYHIGPGGNFSGLITLLM 255
           ++L PK+   + PG N  G+   +M
Sbjct: 220 VKLSPKSASSLPPGNNIHGMAPSVM 244


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 300 MVSIFWQQLNCSTN 341
           +V IFW  +N STN
Sbjct: 262 IVVIFWYTVNASTN 275


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 300 MVSIFWQQLNCSTN 341
           +V IFW  +N STN
Sbjct: 262 IVVIFWYTVNASTN 275


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 IELLPKNGYHIGPGGNFSGLITLLM 255
           ++L PK+   + PG N  G+   +M
Sbjct: 168 VKLSPKSASSLPPGNNIHGMAPSVM 192


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 IELLPKNGYHIGPGGNFSGLITLLM 255
           ++L PK+   + PG N  G+   +M
Sbjct: 351 VKLSPKSASSLPPGNNIHGMAPSVM 375


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,118
Number of Sequences: 336
Number of extensions: 3173
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)