Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1088
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   4.3  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.6  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   5.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   7.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.9  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 454 PRRRRPLILFLVLSREPEWTTVSKVPVTLSTATRVCLSFVEQLSCCQKMDTISDLEEIS 278
           P+++ P   F+ L +  E   + K P +L +      SF+ QL+  +  D +++  EIS
Sbjct: 204 PKQKHPAYSFVTLPKREE---ILKRPASLHSRVESTNSFINQLNRRRTKDNLTNNPEIS 259


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 589 SVFSPKRTIKQR*RRVVFRDISTYRRKSSVDRRTRIPRTLDEHSS 455
           +V SP  T  +     + R  +T R+  ++ RRTR   T+D +++
Sbjct: 469 AVASPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMDRYAT 513


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 562 KQR*RRVVFRDISTYRRKSSVDRRTRIPRTLDEHS 458
           KQ+  R + +D+S  R   S+DR      T+D+ S
Sbjct: 52  KQKENRKILKDVSLKRLSKSLDRSLPSENTIDQIS 86


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -1

Query: 535 RDISTYRRKSSVDRRTRIPRTLDEHSSPRRRRPLILFLVLSREPEWTTVSKVPVTLSTAT 356
           R + T + KS +++   +    D  SSPRRR PL+          ++  SKV  + ST  
Sbjct: 216 RGLDTIKHKS-IEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSK-SKVRNSNSTKR 273

Query: 355 RVCLSFVEQLS 323
           R  +S +  +S
Sbjct: 274 RNFISLISMIS 284


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 310 FFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGL 417
           FF SS I    T  HGS  +A LE    +S  +  L
Sbjct: 53  FFNSSMISSNYTFPHGSNKQASLESPVSYSNPIPSL 88


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 379 ELSKQWSTQVLGLKLGRELVVVVYGEKNVRQVFSESEFDGRPNSFFYKLRCLGKRLGVTF 558
           E+S  W    LGL     L +     +N+ + F+E + D R    F+ + C  ++L   F
Sbjct: 331 EISAAWYYMKLGLNCCLRLGL----HRNITEGFTEEQIDSR-RRIFWAIYCYDRQLCTLF 385


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 560 FDGPLWREHRQFTVKHLKNVGFGKTSMELEIQNELE 667
           FD P + E R    KH++ + F +T +E+++  +++
Sbjct: 46  FDSPEFHEGRIRGQKHIEGLWFVQTYLEVDLSKKVK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,321
Number of Sequences: 5004
Number of extensions: 56007
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)