Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1088
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0898 + 25772496-25773501,25774540-25775150 40 0.002
04_01_0367 + 4834602-4835489,4836117-4836644 37 0.013
08_02_1194 + 25147935-25149455 33 0.27
03_01_0087 - 704715-705347,705423-706349 33 0.27
03_05_0069 - 20466717-20467373,20470285-20471247 32 0.36
06_03_1261 - 28814617-28814890,28814989-28815068,28815287-28815703 32 0.48
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 31 0.83
02_01_0638 + 4785232-4786155,4786418-4787038 31 0.83
10_08_0611 - 19213994-19214053,19214776-19215732 30 1.5
03_06_0040 + 31240164-31241102,31241280-31241897 30 1.9
03_02_0373 - 7865708-7866310,7869547-7870443 30 1.9
02_01_0641 + 4800371-4800703,4801703-4801863,4802013-4802379 29 2.5
08_02_1192 - 25102533-25104050 29 3.3
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 29 4.4
08_02_1193 + 25125419-25126810 29 4.4
02_01_0630 - 4724316-4724945,4725083-4726012 28 5.9
04_04_0653 - 26961775-26962244,26962332-26962767 28 7.7
>06_03_0898 + 25772496-25773501,25774540-25775150
Length = 538
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
+ PPGP PF GS + M + +AL EL+++ V+ L+LG VVV +
Sbjct: 50 RLPPGPWRLPFVGSLHHLAVMRPRGVVVHRALAELARRHDAPVMYLRLGELPVVVASSPE 109
Query: 460 NVRQVFS--ESEFDGRPNSFFYKLRCLGKRLGVTF 558
R+V ++ F R S + +G ++G+ F
Sbjct: 110 AAREVLKTHDAAFATRAMSVTVR-ESIGDKVGILF 143
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 37.1 bits (82), Expect = 0.013
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Frame = +1
Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
K K PPGP P G +I Q + +K +W + L + T++L L+LG V+ +
Sbjct: 25 KQPKLPPGPATMPVLG--NIHQILMNKPVFRW--IHRLLDEMDTEILCLRLGSVHVIAIA 80
Query: 451 GEKNVRQVF--SESEFDGRPNSFFYKLRCLGKR--LGVTFV*WSSLAR 582
+ R+ +++ RP SF ++ G + +G T W + R
Sbjct: 81 SPEMAREALRRNDAVLTSRPVSFAWRAFSFGYKNTVGSTGDQWKKMRR 128
>08_02_1194 + 25147935-25149455
Length = 506
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
+ PPGP P G+ + S G+ AL L+++ V+ LKLG VVV
Sbjct: 33 RLPPGPTPLPVIGN------VLSLRGNMHHALARLARERYGPVMALKLGLVTAVVVSSPD 86
Query: 460 NVRQVFSESE 489
R+ F++ +
Sbjct: 87 AAREAFTKHD 96
>03_01_0087 - 704715-705347,705423-706349
Length = 519
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 PPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNV 465
PPGP P G+ ++ Q+T + L ++ ++ +L L+LGR +VVV ++
Sbjct: 43 PPGPRPLPIIGNMLMMDQLTH------RGLAAMAARYG-GLLHLRLGRVHMVVVSSPEHA 95
Query: 466 RQVF--SESEFDGRPNS 510
R+V + +F RP S
Sbjct: 96 REVLQVQDGDFSNRPAS 112
>03_05_0069 - 20466717-20467373,20470285-20471247
Length = 539
Score = 32.3 bits (70), Expect = 0.36
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 277 EKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGE 456
E PPGP+ P G ++ Q + +K +W + L +++ ++LG VV V
Sbjct: 36 ESLPPGPVGLPVIG--NMHQMLVNKPVFRW--VHRLLADAGGEIVCVRLGPVHVVAVTSP 91
Query: 457 KNVRQVFSESE--FDGRPNSFFYKLRCLGKR 543
+ R+V +++ F RP +F + +G R
Sbjct: 92 EMAREVLRKNDAVFADRPTTFAAESFSVGYR 122
>06_03_1261 - 28814617-28814890,28814989-28815068,28815287-28815703
Length = 256
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 210 SACLHNSYRINLL*CH-QKCNQTREISSRSDMVSIFWQQLNCSTNDKQTRVAVESVTGTF 386
S L +S+R++ + H QK R++ + V +++Q T KQT V E +
Sbjct: 124 STLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCC 183
Query: 387 ETVVHSGSRLK 419
E++ +LK
Sbjct: 184 ESLTEENKQLK 194
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 505 SVDRRTRIPRTLDEHSSPRRRRPLILFLVLSREPEW 398
SV+ T I R L +H R R+P L L+ PEW
Sbjct: 663 SVEHSTEIGRKLVDHGVARSRKPSKLRLLKMNRPEW 698
>02_01_0638 + 4785232-4786155,4786418-4787038
Length = 514
Score = 31.1 bits (67), Expect = 0.83
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +1
Query: 286 PPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQ-WSTQVLGLKLGRELVVVVYGEKN 462
PP P PF GS ++++ H +AL ++++Q S ++ +++G +VV
Sbjct: 37 PPSPPRLPFIGSFHLLRRSPLVH----RALADVARQLGSPPLMYMRIGELPAIVVSSADA 92
Query: 463 VRQVFS--ESEFDGRP-NSFFYKLRCLGKRLGVTFV*WSSLAR 582
R+V + +F RP KLR GK G+ F + +L R
Sbjct: 93 AREVMKTHDIKFASRPWPPTIRKLRAQGK--GIFFEPYGALWR 133
>10_08_0611 - 19213994-19214053,19214776-19215732
Length = 338
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +1
Query: 283 FPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKN 462
FPPGP P G+ +++ Q+T + L L+K++ ++ L+LGR V +
Sbjct: 39 FPPGPKPLPIVGNMAMMDQLTH------RGLAALAKEYG-GLMHLRLGRLHAFAVSTPEY 91
Query: 463 VRQVF--SESEFDGRP 504
R+V + F RP
Sbjct: 92 AREVLQAQDGAFSNRP 107
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 29.9 bits (64), Expect = 1.9
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +1
Query: 286 PPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNV 465
PP P PFFG ++ + + A L + V L+LG VVV +
Sbjct: 33 PPSPPAIPFFGHLHLIDK-------PFHAALSRLAERHGPVFSLRLGSRNAVVVSSPECA 85
Query: 466 RQVFSESE--FDGRPNSFFYKLRCL-GKRLGVTFV--*WSSLARTQTVH 597
R+ F++++ F RP L G LG W +L R TVH
Sbjct: 86 RECFTDNDVCFANRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVH 134
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
+ PPGP W P ++ K Q ++L L+ ++ V+ L+LG L VVV
Sbjct: 31 RLPPGP-WPPKPLIGDLLA--LGKGDQQHRSLARLADRYGP-VMSLRLGTVLTVVVSTPD 86
Query: 460 NVRQVF--SESEFDGRPNS 510
+R++F ++ GRP +
Sbjct: 87 AMREIFHKNKDNLAGRPTA 105
>02_01_0641 + 4800371-4800703,4801703-4801863,4802013-4802379
Length = 286
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
K PPGP P GS + + H +A+ +L+++ ++ LKLG VV+
Sbjct: 35 KLPPGPWRLPVIGSMHHLMGESLVH----RAMADLARRLDAPLMYLKLGEVPVVLASSPC 90
Query: 460 NVRQVFSESE--FDGRPNS 510
R++ + F RP S
Sbjct: 91 AAREIMRAHDVAFASRPLS 109
>08_02_1192 - 25102533-25104050
Length = 505
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
+ PPGP P G+ + S G L L+++ V+ LKLG VVV
Sbjct: 34 RLPPGPTPLPVIGN------VLSLSGDMHHELARLAREQYGPVMTLKLGLFTAVVVSSPD 87
Query: 460 NVRQVFSESE 489
R+ F++ +
Sbjct: 88 AAREAFTKHD 97
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 316 GSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNVRQVFSESEFD 495
G ++ + T +Q K L + + W + +LG ++V N+ + + EFD
Sbjct: 280 GKEAMSKLWTFAETTQQKILTFMWRWWLARNKVAQLGMTDIIVEMDATNLHRALTSKEFD 339
Query: 496 GRPNSFFYK 522
PN ++
Sbjct: 340 RNPNGALFR 348
>08_02_1193 + 25125419-25126810
Length = 463
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
+ + PPGP P G+ + S G+ AL L+ + V+ LKLG VVV
Sbjct: 29 RSRRLPPGPTPLPVIGN------VLSLRGNMHHALARLAGEHGP-VMALKLGLVTTVVVS 81
Query: 451 GEKNVRQVFSESE 489
R+ F++ +
Sbjct: 82 SAGAAREAFTKHD 94
>02_01_0630 - 4724316-4724945,4725083-4726012
Length = 519
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
+ PPGP P GS + H +AL +L+++ ++ L+LG VVV
Sbjct: 38 RLPPGPWRLPVIGSLHHLAGKPLVH----RALADLARRMDAPLMYLRLGEVPVVVATSPG 93
Query: 460 NVRQVFSESE--FDGRPNS 510
R+V + F RP S
Sbjct: 94 AAREVMRTHDVAFATRPVS 112
>04_04_0653 - 26961775-26962244,26962332-26962767
Length = 301
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 286 PPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNV 465
PPGP PF G+ MT + L +L+ ++ +L L+LGR VVV +
Sbjct: 39 PPGPRGLPFVGNILHTSDMTH------RGLAQLASRYG-GLLHLRLGRLRTVVVSTPEMA 91
Query: 466 RQVF--SESEFDGRPNS 510
R V ++ F RP +
Sbjct: 92 RLVLHVNDRAFADRPTT 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,244
Number of Sequences: 37544
Number of extensions: 345936
Number of successful extensions: 910
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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