Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1088
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8237| Best HMM Match : Chordopox_A13L (HMM E-Value=0.83)            36   0.023
SB_14901| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_677| Best HMM Match : p450 (HMM E-Value=0)                          33   0.21 
SB_8238| Best HMM Match : p450 (HMM E-Value=0)                         33   0.21 
SB_2762| Best HMM Match : p450 (HMM E-Value=0)                         33   0.21 
SB_42785| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_30748| Best HMM Match : RBM1CTR (HMM E-Value=2.1)                   31   1.1  
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_1449| Best HMM Match : Chordopox_A13L (HMM E-Value=8.3)             29   2.6  
SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)                29   3.4  
SB_2560| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7174| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_8237| Best HMM Match : Chordopox_A13L (HMM E-Value=0.83)
          Length = 186

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGS-SSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVV 447
           +P   PPGP  YP  G+   ++   +S H      L EL+K + + V  L L  +  VVV
Sbjct: 24  EPSNLPPGPRPYPLIGNLPLLIGSFSSLHAK----LTELAKTYGS-VYILYLNGQRSVVV 78

Query: 448 YGEKNVRQ--VFSESEFDGRPNSF 513
              K  R+  V  +  F GRP SF
Sbjct: 79  CSAKAAREGLVERKDAFSGRPYSF 102


>SB_14901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +1

Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
           K PPGP+  P  G++ ++                L++++   V  L+LGR+LVVV+    
Sbjct: 47  KLPPGPLPLPLIGNAHLLGDKPHLE------FCRLARKYGP-VYKLRLGRQLVVVINDLA 99

Query: 460 NVRQVFSESEFDGRPNS 510
            +++    S+F GR  S
Sbjct: 100 LIKEASRGSDFAGRAKS 116


>SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
           +P   PPGP  YP  G++ +   +     S    L EL+K + + V  L L  +  V+V 
Sbjct: 24  EPSNLPPGPRPYPLIGNTPL---LIGSFSSLHVKLTELAKIYGS-VYTLYLNGQRSVIVC 79

Query: 451 GEKNVRQ--VFSESEFDGRPNSF 513
             K  R+  V  +    GRP SF
Sbjct: 80  SAKAAREGLVERKDAIAGRPYSF 102


>SB_677| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
           +P   PPGP  YP  G+  +   +     S    L EL+K + + V  L L  +  VVV 
Sbjct: 24  EPSNLPPGPRPYPLIGNLPL---LIGSFSSLHVKLTELAKTYGS-VYTLYLNGQRSVVVC 79

Query: 451 GEKNVRQ--VFSESEFDGRPNSF 513
             K  R+  V  +    GRP SF
Sbjct: 80  SAKAAREGLVERKDAIAGRPYSF 102


>SB_8238| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
           +P   PPGP  YP  G+  +   +     S      EL+K + + V  L L  +  VVV 
Sbjct: 24  EPSNLPPGPRPYPLIGNLPL---LIGSFSSLHVKFTELAKTYGS-VYTLYLNGQRSVVVG 79

Query: 451 GEKNVRQ--VFSESEFDGRPNSFFYKLRCLG-KRLG 549
             K + +  V  +    GRP SF  +  C G K +G
Sbjct: 80  SAKALHEGLVERKDAIAGRPYSFSMEYGCKGCKNVG 115


>SB_2762| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
           +P   PPGP  YP  G+  +   +     S    L EL+K + + V  L L  +  VVV 
Sbjct: 24  EPSNLPPGPRPYPLIGNLPL---LIGSFSSLHVKLTELAKTYGS-VYTLYLNGQRSVVVC 79

Query: 451 GEKNVRQ--VFSESEFDGRPNSF 513
             K  R+  V  +    GRP SF
Sbjct: 80  SAKAAREGLVERKDAIAGRPYSF 102


>SB_42785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 337 QMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVV 441
           Q+ + HGSQW++++   K W + V+  K  + +VV
Sbjct: 49  QVMAVHGSQWQSMVANGKSWQSMVVNGKSWQSMVV 83



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 337 QMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
           Q+ + HGSQWK +     QW  QV+ +   +  V  VYG +
Sbjct: 166 QVMAVHGSQWKVMAVHGSQW--QVMAVHGSQWQVTAVYGSR 204



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 337 QMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVV 441
           Q+ + HGSQW+ +     QW + V   K  + +VV
Sbjct: 39  QVMADHGSQWQVMAVHGSQWQSMVANGKSWQSMVV 73


>SB_30748| Best HMM Match : RBM1CTR (HMM E-Value=2.1)
          Length = 390

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 580 SPKRTIKQR*RRVVFRDISTYRRKSSVDRRTRIPRTLDEHSSPRRR 443
           S +R + +R + V FR+   YRR   V  R R+    D+H+  R R
Sbjct: 301 SKERLVYRRDQHVPFRERLVYRRDQHVPFRERLVYRRDQHAPSRER 346


>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1254

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 448  RRRPLILFLVLS-REPEWTTVSKVPVTLSTATRVCLSFVEQLSCCQKMDTISDLEEISRV 272
            RR P   F + S  +P+WT +S    ++S   R   + V+        D I + EE+SRV
Sbjct: 1068 RRSPRASFYIQSVHKPKWTDLSASQWSISEKNRSDFALVDPEVLSPYFDGIEESEELSRV 1127


>SB_9067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 337 QMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVV 441
           Q+ + HGSQW++++   K W + V   K  + +VV
Sbjct: 19  QVMAVHGSQWQSMVVSDKSWQSMVESDKSWQSMVV 53



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 337 QMTSKHGSQWKALLELSKQWSTQVLGLKLGRELV 438
           Q+ + HGSQW+ +     QW + V+  K  + +V
Sbjct: 9   QVMAVHGSQWQVMAVHGSQWQSMVVSDKSWQSMV 42


>SB_1449| Best HMM Match : Chordopox_A13L (HMM E-Value=8.3)
          Length = 97

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +1

Query: 271 KPEKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVY 450
           +P   PPGP  YP  G+S +   +     S      EL+K + + V  L L  +  VVV 
Sbjct: 33  EPSNLPPGPRPYPIIGNSPL---LIGSFSSLHVKFTELAKTYGS-VYTLYLNGQRSVVVC 88

Query: 451 GEKNVRQ 471
             K  R+
Sbjct: 89  SAKAARE 95


>SB_49196| Best HMM Match : efhand (HMM E-Value=3.4e-39)
          Length = 659

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +1

Query: 286 PPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKNV 465
           PPGP  YPF G+   +  +        K+L  L KQ+   V  ++L  +  V++   K  
Sbjct: 304 PPGPPLYPFVGNFPQIGPVLH------KSLTSLGKQYGRGVFQVQLLGKRFVIIDNIKLA 357

Query: 466 RQV 474
           RQV
Sbjct: 358 RQV 360


>SB_2560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = -1

Query: 580 SPKRTIKQR*RRVVFRDI---STYRRKSSVDRRTRIPRTL--DEHSSPRRRRPLI 431
           SP+  + ++ R+ + +     S  +RKS   RR  +P+TL  D   +P  R PL+
Sbjct: 116 SPEAPLTRKDRKCLLKQTKSPSDVKRKSKASRRQSVPQTLFNDSRVAPVTRSPLV 170


>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 555 GDAESFSETSQLIEERVRSTVELGFREHLTNILLPV 448
           G+A S  ET   IE  V +  E     H TN+L P+
Sbjct: 185 GEANSNVETQSFIEASVETFTENMLANHATNLLYPL 220


>SB_7174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 499 DRRTRIPRTLDEHSSPRRRRPLILFLVLSREPEWTTVSKVPVTLSTATRVCL-SFVEQLS 323
           D  T   R  ++ S+ R+RR  +  L+LSRE     +S  P       RV L   + + S
Sbjct: 13  DAETGSKRMREDESNRRKRR--LFLLILSRELPVFPISATPWVPENVNRVLLYRCISRYS 70

Query: 322 C-CQ 314
           C CQ
Sbjct: 71  CFCQ 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,261,658
Number of Sequences: 59808
Number of extensions: 402252
Number of successful extensions: 1201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)