Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1088
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 282 ISSRSDMVSIFWQQLNCSTNDKQTRVAVESVTGTFETVVHSGS 410
           +S  S+ +   W       N+KQ+   + + +  F  + HSGS
Sbjct: 83  LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGS 125


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 282 ISSRSDMVSIFWQQLNCSTNDKQTRVAVESVTGTFETVVHSGS 410
           +S  S+ +   W       N+KQ+   + + +  F  + HSGS
Sbjct: 83  LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGS 125


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 282 ISSRSDMVSIFWQQLNCSTNDKQTRVAVESVTGTFETVVHSGS 410
           +S  S+ +   W       N+KQ+   + + +  F  + HSGS
Sbjct: 22  LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGS 64


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 472 LDEHSSPRRRRPLILFLVLSREPEWTTVSKVP 377
           LDE  S R   PL+L  +   +P + ++S  P
Sbjct: 874 LDEFPSVRPFAPLLLLHLTPLQPRFYSISSSP 905


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 624 KPTFFKCFTVNCLCSRQRGPSNKGDAESFSETSQLIEE 511
           K TFF+   V  L +   G  N+   E+F +T + I E
Sbjct: 250 KTTFFESCGVADLIATCYGGRNRKICEAFVKTGKKISE 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,402
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)