Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1088
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc...    29   2.1  
At3g44250.1 68416.m04749 cytochrome P450 family protein CYTOCHRO...    29   2.1  
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative        29   2.8  
At4g12910.1 68417.m02019 serine carboxypeptidase S10 family prot...    29   3.7  
At4g01160.1 68417.m00154 BTB/POZ domain-containing protein conta...    29   3.7  
At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) / ferula...    28   4.9  
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa...    28   6.5  
At5g67310.1 68418.m08488 cytochrome P450 family protein                27   8.5  
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa...    27   8.5  
At1g17840.1 68414.m02208 ABC transporter family protein similar ...    27   8.5  

>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to cyclophylin
           [Digitalis lanata] GI:1563719; contains Pfam profile
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type; contains AT-donor splice site at
           intron 9
          Length = 570

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 556 R*RRVVFRDISTYRRKSSVDRRTRIPRTLDEHSSPRRRRPL 434
           R RR   R    YRR+     R++ PR      SPR+R+P+
Sbjct: 485 RRRRSTSRSPDGYRRRLRDGSRSQSPRHRSRSQSPRKRQPI 525


>At3g44250.1 68416.m04749 cytochrome P450 family protein CYTOCHROME
           P450 71B7 - Arabidopsis thaliana, EMBL:X97864
          Length = 499

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +1

Query: 280 KFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEK 459
           K PPGPI  P  G+   + ++       +K+  ++S+++   VL L+LG   V+VV  ++
Sbjct: 27  KLPPGPIGLPIIGNLHQLGKLL------YKSFHKISQEYGPVVL-LRLGVVPVIVVSSKE 79

Query: 460 NVRQVFSESEFD 495
              +V    + +
Sbjct: 80  GAEEVLKTHDLE 91


>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
          Length = 746

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 392 CFESSSNAFHCDPCLLVIC*TIELLP-KNGYHIGP 291
           CF+     F CDPC   +C     LP K  +H+ P
Sbjct: 27  CFKDEPVEFACDPCNFDLCKACSDLPQKMSHHLHP 61


>At4g12910.1 68417.m02019 serine carboxypeptidase S10 family protein
           SERINE CARBOXYPEPTIDASE I PRECURSOR - Hordeum vulgare,
           SWall:CBP1_HORVU
          Length = 484

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = +3

Query: 195 FRNAASACLHNSYRINLL*CHQKCNQTREISSRSDMVSIFWQQLNCSTNDKQTRVAVESV 374
           F N   AC  N Y I  L C +   Q  +++  ++ ++I+     C      +   + S+
Sbjct: 247 FENVTKACKGNFYEIEGLECEE---QYTKVNDDTNQLNIYNILEPCYHGTSLSAFDIRSL 303

Query: 375 TGTFETVVHSGSRLKTRKRISGR 443
             +   +  +  RL  RKR+ GR
Sbjct: 304 PSSLLQLGKTEKRLPIRKRMFGR 326


>At4g01160.1 68417.m00154 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB
           containing-protein AtPOB1 (GI:12006855) [Arabidopsis
           thaliana]; similar to actinfilin (GI:21667852) [Rattus
           norvegicus]
          Length = 505

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -2

Query: 651 ISSSIDVLPKPTFFKCFTVNCLCSRQRGPSNKGDAESFSETSQLIEERVRSTVELGFREH 472
           ISS+I     P F+K F+   L S Q+  + K DA   +   +L++    +++ +     
Sbjct: 102 ISSAILAAKSPFFYKLFSNGMLESEQKQMTLKIDASEETAVMELLKFMYSNSLSVTASSA 161

Query: 471 LTNILLPVD 445
           L ++L+  D
Sbjct: 162 LLDVLMVAD 170


>At4g36220.1 68417.m05153 cytochrome P450 84A1 (CYP84A1) /
           ferulate-5-hydroxylase (FAH1) identical to Cytochrome
           P450 84A1 (Ferulate-5-hydroxylase) (SP|Q42600)
           [Arabidopsis thaliana]
          Length = 520

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 283 FPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGEKN 462
           +PPGP  +P  G+  ++ Q+T       + L  L+K++   +  L++G   +  V   + 
Sbjct: 40  YPPGPRGWPIIGNMLMMDQLTH------RGLANLAKKYG-GLCHLRMGFLHMYAVSSPEV 92

Query: 463 VRQVF--SESEFDGRP 504
            RQV    +S F  RP
Sbjct: 93  ARQVLQVQDSVFSNRP 108


>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 589

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 550 VTFV*WSSLARTQTVHCKTFKECW 621
           + FV WS++A T T+  K  KE W
Sbjct: 228 ILFVFWSAIAATATLEGKVLKEQW 251


>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +1

Query: 277 EKFPPGPIWYPFFGSSSIVQQMTSKHGSQWKALLELSKQWSTQVLGLKLGRELVVVVYGE 456
           +  PP P+ +P  G   ++++   +      +L +LS+     V  L+LG    VVV   
Sbjct: 40  KNLPPNPVGFPVIGHLHLLKEPVHR------SLRDLSRNLGIDVFILRLGSRRAVVVTSA 93

Query: 457 KNVRQVFSESE---FDGRP 504
               +  S+     F  RP
Sbjct: 94  SAAEEFLSQQNDVVFANRP 112


>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 740

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 547 RVVFRDISTYRRKSSVDRRTRIPRTLDEHSSPRRRRPLILFL 422
           R +F+D ST       D+  R+P+ +   SSPR  R   LF+
Sbjct: 572 RGLFKDPSTQEVVYGRDQSLRVPQAVRSSSSPRIERLRSLFI 613


>At1g17840.1 68414.m02208 ABC transporter family protein similar to
           ABC transporter GI:10280532 from [Homo sapiens]
          Length = 703

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 108 LAYHFLALEGAVQNDCSSTFLKTQLLTIAFRNAASACLHNSYRINL 245
           +++HF AL+G  QND       +Q    AF+      L N ++I+L
Sbjct: 579 ISFHFWALQGQYQNDLRGLTFDSQ--GSAFKIPGEYVLENVFQIDL 622


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,188
Number of Sequences: 28952
Number of extensions: 289641
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)