Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1087
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664...    29   1.6  

>07_03_1510 +
           27264999-27265371,27265485-27265546,27265768-27266436,
           27266842-27267288
          Length = 516

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 303 LFEAIVIRKNISRNRTNTIQIMGGIETRVRIRNKSGTSQFFVELFDLICSTEYDFYL 133
           +F  +VI + I       +++   I  R  IRN   T Q+ VE  +L  +  YD Y+
Sbjct: 66  IFYGMVISQGIPYIVAGILEVFSFIPQRALIRNGGFTGQWGVESVNLYYAYAYDKYM 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,876,204
Number of Sequences: 37544
Number of extensions: 73875
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)