BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1087 (382 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 29 1.6 >07_03_1510 + 27264999-27265371,27265485-27265546,27265768-27266436, 27266842-27267288 Length = 516 Score = 28.7 bits (61), Expect = 1.6 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = -2 Query: 303 LFEAIVIRKNISRNRTNTIQIMGGIETRVRIRNKSGTSQFFVELFDLICSTEYDFYL 133 +F +VI + I +++ I R IRN T Q+ VE +L + YD Y+ Sbjct: 66 IFYGMVISQGIPYIVAGILEVFSFIPQRALIRNGGFTGQWGVESVNLYYAYAYDKYM 122 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,876,204 Number of Sequences: 37544 Number of extensions: 73875 Number of successful extensions: 100 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 624784784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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