BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1087 (382 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT010114-1|AAQ22583.1| 515|Drosophila melanogaster GH02426p pro... 27 8.2 AE014297-3395|AAX52972.1| 515|Drosophila melanogaster CG33111-P... 27 8.2 AE014297-3394|AAS65199.1| 515|Drosophila melanogaster CG33111-P... 27 8.2 AE014297-3393|AAF56193.2| 515|Drosophila melanogaster CG33111-P... 27 8.2 >BT010114-1|AAQ22583.1| 515|Drosophila melanogaster GH02426p protein. Length = 515 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160 GG+ R R R K+GTS+ E+F ++ Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491 >AE014297-3395|AAX52972.1| 515|Drosophila melanogaster CG33111-PC, isoform C protein. Length = 515 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160 GG+ R R R K+GTS+ E+F ++ Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491 >AE014297-3394|AAS65199.1| 515|Drosophila melanogaster CG33111-PB, isoform B protein. Length = 515 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160 GG+ R R R K+GTS+ E+F ++ Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491 >AE014297-3393|AAF56193.2| 515|Drosophila melanogaster CG33111-PA, isoform A protein. Length = 515 Score = 27.1 bits (57), Expect = 8.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -2 Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160 GG+ R R R K+GTS+ E+F ++ Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,771,398 Number of Sequences: 53049 Number of extensions: 145152 Number of successful extensions: 339 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 339 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 339 length of database: 24,988,368 effective HSP length: 77 effective length of database: 20,903,595 effective search space used: 1024276155 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -