Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1087
         (382 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010114-1|AAQ22583.1|  515|Drosophila melanogaster GH02426p pro...    27   8.2  
AE014297-3395|AAX52972.1|  515|Drosophila melanogaster CG33111-P...    27   8.2  
AE014297-3394|AAS65199.1|  515|Drosophila melanogaster CG33111-P...    27   8.2  
AE014297-3393|AAF56193.2|  515|Drosophila melanogaster CG33111-P...    27   8.2  

>BT010114-1|AAQ22583.1|  515|Drosophila melanogaster GH02426p
           protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160
           GG+  R R R K+GTS+   E+F ++
Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491


>AE014297-3395|AAX52972.1|  515|Drosophila melanogaster CG33111-PC,
           isoform C protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160
           GG+  R R R K+GTS+   E+F ++
Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491


>AE014297-3394|AAS65199.1|  515|Drosophila melanogaster CG33111-PB,
           isoform B protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160
           GG+  R R R K+GTS+   E+F ++
Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491


>AE014297-3393|AAF56193.2|  515|Drosophila melanogaster CG33111-PA,
           isoform A protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 237 GGIETRVRIRNKSGTSQFFVELFDLI 160
           GG+  R R R K+GTS+   E+F ++
Sbjct: 466 GGVTLRRRNRRKTGTSEALKEMFQVL 491


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,398
Number of Sequences: 53049
Number of extensions: 145152
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)