BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1087 (382 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical pr... 27 6.0 Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical p... 27 6.0 X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. 27 6.0 X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. 27 6.0 >Z81084-7|CAB03111.1| 312|Caenorhabditis elegans Hypothetical protein F46A9.6 protein. Length = 312 Score = 26.6 bits (56), Expect = 6.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 225 TRVRIRNKSGTSQFFVELFDLICSTE 148 TR+R+ NK+G+ FVE DL +T+ Sbjct: 255 TRLRLHNKNGSCVAFVEYSDLQKATQ 280 >Z81037-10|CAB02754.1| 312|Caenorhabditis elegans Hypothetical protein F46A9.6 protein. Length = 312 Score = 26.6 bits (56), Expect = 6.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 225 TRVRIRNKSGTSQFFVELFDLICSTE 148 TR+R+ NK+G+ FVE DL +T+ Sbjct: 255 TRLRLHNKNGSCVAFVEYSDLQKATQ 280 >X95609-1|CAA64867.1| 312|Caenorhabditis elegans mec-8 protein. Length = 312 Score = 26.6 bits (56), Expect = 6.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 225 TRVRIRNKSGTSQFFVELFDLICSTE 148 TR+R+ NK+G+ FVE DL +T+ Sbjct: 255 TRLRLHNKNGSCVAFVEYSDLQKATQ 280 >X95608-1|CAA64866.1| 312|Caenorhabditis elegans mec-8 protein. Length = 312 Score = 26.6 bits (56), Expect = 6.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -2 Query: 225 TRVRIRNKSGTSQFFVELFDLICSTE 148 TR+R+ NK+G+ FVE DL +T+ Sbjct: 255 TRLRLHNKNGSCVAFVEYSDLQKATQ 280 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,843,001 Number of Sequences: 27780 Number of extensions: 83019 Number of successful extensions: 178 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 178 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 567749674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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