BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1086 (694 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 31 0.12 SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 29 0.64 SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 1.9 SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 2.6 SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6 SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 3.4 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 3.4 SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.5 SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 5.9 SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.9 SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 7.9 SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 7.9 SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.9 SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 7.9 SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 7.9 SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 7.9 >SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1111 Score = 31.5 bits (68), Expect = 0.12 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = -1 Query: 685 AHFQLNIARHVWVQILYRSRFDYLFSSWKQRGTPISITMSNSSGLFIRTLS 533 A F + + H+W+ L + + ++ + Q +P++ +SNS L+IRTLS Sbjct: 881 ATFAPHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVNTALSNSL-LYIRTLS 930 >SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pombe|chr 2|||Manual Length = 96 Score = 29.1 bits (62), Expect = 0.64 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +3 Query: 462 KKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMV 575 +K KEID Y+R S++ A Y N + P E M+ Sbjct: 36 QKQKEIDENYHRQESLIESAKIAYLNTKNTPPKEDSML 73 >SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces pombe|chr 1|||Manual Length = 619 Score = 27.5 bits (58), Expect = 1.9 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +3 Query: 351 TNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 491 T +S + SV + ++KES ++ Y++ F+N ++ KEI +Y Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603 >SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 594 Score = 27.1 bits (57), Expect = 2.6 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = -3 Query: 110 INNYSITDNVIIYHYS--LNHLNFW 42 +N+Y +T V++Y+YS N+ +FW Sbjct: 1 MNSYVLTSQVLVYNYSKRKNYWHFW 25 >SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 180 Score = 27.1 bits (57), Expect = 2.6 Identities = 8/25 (32%), Positives = 16/25 (64%) Frame = -3 Query: 161 IRILIWAIHFALKIFQIINNYSITD 87 + +L+W +F ++F I+ YS+ D Sbjct: 41 VSLLVWNFYFGYRVFYRISKYSLID 65 >SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 387 Score = 26.6 bits (56), Expect = 3.4 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = +3 Query: 468 MKEIDPYYNRYSSMVHHAGSHYDNVRINKPDE 563 +KE+ P+++ S+ + G D+ I+K DE Sbjct: 96 LKELKPFHSTLSAFTNETGGIIDDTIISKQDE 127 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 26.6 bits (56), Expect = 3.4 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = +3 Query: 354 NLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHH 518 NL+ +AD+S + ++L+ +LH +L+ + NL + + D N+ S H Sbjct: 460 NLQREIADLSEQIVELESKRNDLHSALLE-MGGNLTSLLTKKDSIANKISDQSEH 513 >SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor Sec74|Schizosaccharomyces pombe|chr 1|||Manual Length = 928 Score = 26.2 bits (55), Expect = 4.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 193 TFWEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAKKGLA 324 T E ++ H N SVR++N R + S++ L+S G A Sbjct: 840 TILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGKA 883 >SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schizosaccharomyces pombe|chr 2|||Manual Length = 612 Score = 25.8 bits (54), Expect = 5.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +3 Query: 138 NSPNQNTNNTESLLRSIIN 194 N+PN + N ++LRSIIN Sbjct: 400 NAPNYDLTNAHAVLRSIIN 418 >SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 25.8 bits (54), Expect = 5.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 199 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAK 312 WE+ Q + SV KN+ KRKR + L + K Sbjct: 27 WERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64 >SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 317 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 262 RKRASIETAGLQSRN-AKKGLATKYLTIQKLLI 357 R R SIETAGL SR+ A +A L ++ L + Sbjct: 140 RTRLSIETAGLTSRSLAINNVANNSLKVKPLTL 172 >SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 736 Score = 25.4 bits (53), Expect = 7.9 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = +3 Query: 312 EGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMK 473 E +S+ VP++P+ +N ++ I++ E E ++V DT++ LHK K Sbjct: 128 ETVSENVPHSPQSSN-------DAIPVIKITE---ENSFRVKDTLYVGLHKDQK 171 >SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 745 Score = 25.4 bits (53), Expect = 7.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +3 Query: 285 SRAPESKCKEGISDKVPYNPKITNLES 365 S P +EGI D +P NP N+ S Sbjct: 609 SDLPPDSVREGIKDVLPINPHTGNIYS 635 >SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces pombe|chr 2|||Manual Length = 603 Score = 25.4 bits (53), Expect = 7.9 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +3 Query: 282 NSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLH 461 +S P+S+ E S P+IT+L R +L ++ H L +F N+H Sbjct: 91 SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150 Query: 462 KKMK 473 ++++ Sbjct: 151 RELE 154 >SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 652 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +3 Query: 291 APESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVL 437 +P + GIS Y P + L+S L DI ++ ++ES E+ +L Sbjct: 26 SPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSML 74 >SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosaccharomyces pombe|chr 1|||Manual Length = 1168 Score = 25.4 bits (53), Expect = 7.9 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Frame = +3 Query: 369 LADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDP-------YYNRYSSMVHHAGS 527 L D S Y + K + + D+ QN+ + +KEI P N S+ V+ A Sbjct: 38 LHDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASH 97 Query: 528 HYDNVRINKPDEFDMVIEIGVP 593 D+ ++K + M + +P Sbjct: 98 DLDSKDVDKQHQRKMFPGLSIP 119 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,703,841 Number of Sequences: 5004 Number of extensions: 53069 Number of successful extensions: 168 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 168 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 321951680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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