Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    31   0.12 
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb...    29   0.64 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   1.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.6  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    27   3.4  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.5  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   5.9  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   7.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   7.9  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.9  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   7.9  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.9  

>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -1

Query: 685  AHFQLNIARHVWVQILYRSRFDYLFSSWKQRGTPISITMSNSSGLFIRTLS 533
            A F  + + H+W+  L + +  ++   + Q  +P++  +SNS  L+IRTLS
Sbjct: 881  ATFAPHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVNTALSNSL-LYIRTLS 930


>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 462 KKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMV 575
           +K KEID  Y+R  S++  A   Y N +   P E  M+
Sbjct: 36  QKQKEIDENYHRQESLIESAKIAYLNTKNTPPKEDSML 73


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 351 TNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 491
           T  +S +   SV + ++KES  ++ Y++    F+N ++  KEI  +Y
Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -3

Query: 110 INNYSITDNVIIYHYS--LNHLNFW 42
           +N+Y +T  V++Y+YS   N+ +FW
Sbjct: 1   MNSYVLTSQVLVYNYSKRKNYWHFW 25


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 161 IRILIWAIHFALKIFQIINNYSITD 87
           + +L+W  +F  ++F  I+ YS+ D
Sbjct: 41  VSLLVWNFYFGYRVFYRISKYSLID 65


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 468 MKEIDPYYNRYSSMVHHAGSHYDNVRINKPDE 563
           +KE+ P+++  S+  +  G   D+  I+K DE
Sbjct: 96  LKELKPFHSTLSAFTNETGGIIDDTIISKQDE 127


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 354 NLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHH 518
           NL+  +AD+S + ++L+    +LH  +L+ +  NL   + + D   N+ S    H
Sbjct: 460 NLQREIADLSEQIVELESKRNDLHSALLE-MGGNLTSLLTKKDSIANKISDQSEH 513


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 193 TFWEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAKKGLA 324
           T  E  ++ H N SVR++N R  +   S++   L+S     G A
Sbjct: 840 TILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGKA 883


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 138 NSPNQNTNNTESLLRSIIN 194
           N+PN +  N  ++LRSIIN
Sbjct: 400 NAPNYDLTNAHAVLRSIIN 418


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 199 WEQYYQPHHNRSVRKNNQREKRKRASIETAGLQSRNAK 312
           WE+  Q   + SV KN+   KRKR   +   L  +  K
Sbjct: 27  WERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 RKRASIETAGLQSRN-AKKGLATKYLTIQKLLI 357
           R R SIETAGL SR+ A   +A   L ++ L +
Sbjct: 140 RTRLSIETAGLTSRSLAINNVANNSLKVKPLTL 172


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 312 EGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMK 473
           E +S+ VP++P+ +N        ++  I++ E   E  ++V DT++  LHK  K
Sbjct: 128 ETVSENVPHSPQSSN-------DAIPVIKITE---ENSFRVKDTLYVGLHKDQK 171


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 285 SRAPESKCKEGISDKVPYNPKITNLES 365
           S  P    +EGI D +P NP   N+ S
Sbjct: 609 SDLPPDSVREGIKDVLPINPHTGNIYS 635


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 282 NSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLH 461
           +S  P+S+  E  S      P+IT+L         R  +L ++    H   L  +F N+H
Sbjct: 91  SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150

Query: 462 KKMK 473
           ++++
Sbjct: 151 RELE 154


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 291 APESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVL 437
           +P  +   GIS    Y P  + L+S L DI  ++  ++ES  E+   +L
Sbjct: 26  SPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCSML 74


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +3

Query: 369 LADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDP-------YYNRYSSMVHHAGS 527
           L D S  Y + K +      +  D+  QN+ + +KEI P         N  S+ V+ A  
Sbjct: 38  LHDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASH 97

Query: 528 HYDNVRINKPDEFDMVIEIGVP 593
             D+  ++K  +  M   + +P
Sbjct: 98  DLDSKDVDKQHQRKMFPGLSIP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,841
Number of Sequences: 5004
Number of extensions: 53069
Number of successful extensions: 168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)