Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    32   0.50 
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    29   3.5  
12_02_0423 + 18944555-18945226,18945309-18945545                       29   4.6  
05_06_0040 + 25116732-25118030                                         28   6.1  
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265...    28   8.1  

>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 417 ELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHH 518
           ++ YK L+T++ + ++K K++D YY     +V H
Sbjct: 42  QVSYKGLETLYDDGYQKAKDLDYYYRSLGELVEH 75


>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 507 CSNICCSMDQFLSFSCEDFGILYLALCN 424
           CS +C   ++F +  CE+ G   LALC+
Sbjct: 18  CSVLCLGAERFGARECEELGFTGLALCS 45


>12_02_0423 + 18944555-18945226,18945309-18945545
          Length = 302

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 220 HHNRSVRKNNQREKRKRASIETAGL 294
           HHN++V+    RE+R+R S +TA L
Sbjct: 158 HHNQAVQSAAARERRRRISSKTAEL 182


>05_06_0040 + 25116732-25118030
          Length = 432

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 558 RVCLYAHCRSDSRHDVPCSNICCSMDQFLSFSC 460
           R C+  H  SD+ HD PC+ + C++  F+S  C
Sbjct: 93  RFCVDIHS-SDNSHD-PCAAVGCAIPSFMSDLC 123


>03_05_0932 +
           28924891-28924935,28925982-28926062,28926464-28926512,
           28926599-28926677,28926762-28926921,28927307-28927440,
           28927814-28927882,28928064-28928151,28928396-28928471,
           28929267-28929340,28929478-28929585,28929858-28930160,
           28930483-28930587,28930670-28930750,28930838-28931852,
           28932086-28932201
          Length = 860

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 477 IDPYYNRYSSMVHHAGSHYDNVRINKPD 560
           IDPY+NR +++V   G     + + KPD
Sbjct: 474 IDPYFNRITALVQSCGDDVSEIDV-KPD 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,667
Number of Sequences: 37544
Number of extensions: 287960
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)