BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1086 (694 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 32 0.50 01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 29 3.5 12_02_0423 + 18944555-18945226,18945309-18945545 29 4.6 05_06_0040 + 25116732-25118030 28 6.1 03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 28 8.1 >01_03_0289 - 14725832-14726114,14726216-14726298,14726432-14726545, 14727830-14728199,14728726-14728856,14728970-14729078, 14729257-14729378,14729522-14729625,14729849-14729953, 14730034-14730192,14730336-14730391,14730576-14730627, 14730725-14731031 Length = 664 Score = 31.9 bits (69), Expect = 0.50 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 417 ELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHH 518 ++ YK L+T++ + ++K K++D YY +V H Sbjct: 42 QVSYKGLETLYDDGYQKAKDLDYYYRSLGELVEH 75 >01_06_1645 + 38884606-38884777,38885509-38885567,38885933-38886114, 38886559-38886634 Length = 162 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 507 CSNICCSMDQFLSFSCEDFGILYLALCN 424 CS +C ++F + CE+ G LALC+ Sbjct: 18 CSVLCLGAERFGARECEELGFTGLALCS 45 >12_02_0423 + 18944555-18945226,18945309-18945545 Length = 302 Score = 28.7 bits (61), Expect = 4.6 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 220 HHNRSVRKNNQREKRKRASIETAGL 294 HHN++V+ RE+R+R S +TA L Sbjct: 158 HHNQAVQSAAARERRRRISSKTAEL 182 >05_06_0040 + 25116732-25118030 Length = 432 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 558 RVCLYAHCRSDSRHDVPCSNICCSMDQFLSFSC 460 R C+ H SD+ HD PC+ + C++ F+S C Sbjct: 93 RFCVDIHS-SDNSHD-PCAAVGCAIPSFMSDLC 123 >03_05_0932 + 28924891-28924935,28925982-28926062,28926464-28926512, 28926599-28926677,28926762-28926921,28927307-28927440, 28927814-28927882,28928064-28928151,28928396-28928471, 28929267-28929340,28929478-28929585,28929858-28930160, 28930483-28930587,28930670-28930750,28930838-28931852, 28932086-28932201 Length = 860 Score = 27.9 bits (59), Expect = 8.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 477 IDPYYNRYSSMVHHAGSHYDNVRINKPD 560 IDPY+NR +++V G + + KPD Sbjct: 474 IDPYFNRITALVQSCGDDVSEIDV-KPD 500 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,870,667 Number of Sequences: 37544 Number of extensions: 287960 Number of successful extensions: 708 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 708 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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