Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)                36   0.031
SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)                 36   0.031
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)                      29   2.7  
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)                  29   3.6  
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        29   4.7  

>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
 Frame = +3

Query: 321 SDKVPYNPKI-TNLESLLADISVRY-IQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYN 494
           +DKV  N +  ++L   L ++  ++ + L++ +     K ++ I     KK+   D    
Sbjct: 61  TDKVLKNARCRSHLNHYLDELDRKFSVDLRDQEVINIRKDMEYIASQFAKKVACHDA--- 117

Query: 495 RYSSMVHHAGSHYDNVRINKPDEFDMVIEI 584
           R+   + ++GSHY+ ++++ PDEFD +IEI
Sbjct: 118 RFKGEILNSGSHYEGLQVSAPDEFDYMIEI 147


>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
          Length = 364

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +3

Query: 450 QNLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEI 584
           Q + K ++E + YY ++  ++   GS+Y+  ++  PDEFD++IEI
Sbjct: 36  QKILKFVEERNTYY-KFDRLLM-TGSYYERAKVKNPDEFDLMIEI 78


>SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)
          Length = 100

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +3

Query: 450 QNLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEI 584
           Q + K ++E + YY ++  ++   GS+Y+  ++  PDEFD++IEI
Sbjct: 36  QKILKFVEERNTYY-KFDRLLM-TGSYYERAKVKNPDEFDLMIEI 78


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 324 DKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYS 503
           D++P    +T LESL  ++  R    +ES+     K LDT   +L K +   + Y+ R  
Sbjct: 627 DRIPLQMALTQLESLADNLKER---KRESELRSRVKQLDTATAHLSKPLSSGNRYFIRQD 683

Query: 504 SMV 512
             V
Sbjct: 684 DFV 686


>SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)
          Length = 340

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 522 GSHYDNVRINKPDEFDMVIEI 584
           GS Y+ ++I  PDEFD +IE+
Sbjct: 140 GSTYEMLKIGMPDEFDFMIEL 160


>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
          Length = 875

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +3

Query: 456 LHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVPLCFHE 608
           L  K+  +DP  + +S ++   GS  + ++++ PDE+D ++ + VP   +E
Sbjct: 468 LISKVSVLDPALD-FSDIIL-TGSVSEGLKVHNPDEYDYLLILNVPFSVYE 516


>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 593 SLLPRGKQIIETRAI*NLNPDMPGYVQLKMGPS 691
           +L P GK++  TR   N N DMPG     + P+
Sbjct: 52  ALTPEGKKLHSTRPPGNANMDMPGPAAFVLSPN 84


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 593 SLLPRGKQIIETRAI*NLNPDMPGYVQLKMGPS 691
           +L P GK++  TR   N N DMPG     + P+
Sbjct: 192 ALTPEGKKLHSTRPPGNANMDMPGPAAFVLSPN 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,386,903
Number of Sequences: 59808
Number of extensions: 383444
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)