Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   1.7  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   2.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   6.9  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 468 MKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGV 590
           +KE+   YNR +S+ +H   H   ++I + D  + ++E  V
Sbjct: 866 LKELFLQYNRIASIANHTFDHLHGLKILRLDH-NRLVEFNV 905


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +3

Query: 408  SDFELHYKVLDTIFQ--NLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIE 581
            S  E  + +LD  +   N H++ K  D YY  Y    H    ++     N   + D   +
Sbjct: 942  SSMETFFDLLDKQYDSYNKHQEYKSSDYYYKYYKQYPHLFKDYFSQYNKNHKYQNDYYEQ 1001

Query: 582  IG 587
             G
Sbjct: 1002 FG 1003


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 327  KVPYNPKITNLESLLADISVRYIQLKESDF-ELHYKVLDTIFQNLHKKMKEIDPYYNRYS 503
            KV Y+ ++     ++     R ++++E  + E+   ++ T +  L   +KE   +Y  + 
Sbjct: 1700 KVTYHNRMGRPVQVVVYDDPRTVRVREIIYDEIDRPIMQTKWTKLTSHLKEYFAFYENFI 1759

Query: 504  SMVH 515
            + VH
Sbjct: 1760 TQVH 1763


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,381
Number of Sequences: 2352
Number of extensions: 11598
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)