Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022230-1|AAY54646.1|  346|Drosophila melanogaster IP12463p pro...    36   0.040
AE014296-1415|AAF50449.1|  346|Drosophila melanogaster CG7194-PA...    36   0.040
AE013599-3998|AAM70802.1|  459|Drosophila melanogaster CG30424-P...    36   0.052
AE013599-2118|AAO41387.1|  394|Drosophila melanogaster CG12970-P...    34   0.21 
AE013599-2117|AAF58101.2|  414|Drosophila melanogaster CG12970-P...    34   0.21 
AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p pro...    30   3.4  
AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA...    30   3.4  

>BT022230-1|AAY54646.1|  346|Drosophila melanogaster IP12463p
           protein.
          Length = 346

 Score = 36.3 bits (80), Expect = 0.040
 Identities = 15/67 (22%), Positives = 37/67 (55%)
 Frame = +3

Query: 393 IQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDM 572
           + + +++  ++ K  + I   +  ++K +D  + +    +   GS+ D V++N PDEFD+
Sbjct: 14  LSISDNERAVYTKEAEEIQNYVVDELKRVDKTFRQVFDGLSLGGSYLDRVKLNLPDEFDL 73

Query: 573 VIEIGVP 593
            +++  P
Sbjct: 74  HMKLKFP 80


>AE014296-1415|AAF50449.1|  346|Drosophila melanogaster CG7194-PA
           protein.
          Length = 346

 Score = 36.3 bits (80), Expect = 0.040
 Identities = 15/67 (22%), Positives = 37/67 (55%)
 Frame = +3

Query: 393 IQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFDM 572
           + + +++  ++ K  + I   +  ++K +D  + +    +   GS+ D V++N PDEFD+
Sbjct: 14  LSISDNERAVYTKEAEEIQNYVVDELKRVDKTFRQVFDGLSLGGSYLDRVKLNLPDEFDL 73

Query: 573 VIEIGVP 593
            +++  P
Sbjct: 74  HMKLKFP 80


>AE013599-3998|AAM70802.1|  459|Drosophila melanogaster CG30424-PA
           protein.
          Length = 459

 Score = 35.9 bits (79), Expect = 0.052
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = +3

Query: 357 LESLLADISVRYIQLKESD---FELHYKVLDT-IFQNLHKKMKEIDPYYNRYSSMVHHAG 524
           +E  L +   +Y+ + + +   +  HY+ L + IF+ L K+  E+D     +S      G
Sbjct: 11  VEKKLYECKKKYVDIPKDEGQRYGKHYEALTSKIFEILRKENPELDIIIAEFSL----EG 66

Query: 525 SHYDNVRINKPDEFDMVIEIGVP 593
           S  D ++I KP+EFD+V ++  P
Sbjct: 67  SVGDMLKIAKPNEFDLVFKLKFP 89


>AE013599-2118|AAO41387.1|  394|Drosophila melanogaster CG12970-PB,
           isoform B protein.
          Length = 394

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 354 NLESLLADISVRYIQLKE--SDFELHYKVL-DTIFQNLHKKMKEIDPYYNRYSSMVHHAG 524
           NLE+++   + +Y+++KE    +  HY  L D ++     K   +     + S++    G
Sbjct: 4   NLENIVNQATAQYVKIKEHREPYTAHYNALKDKVYSEW--KSSAVLGKLLKGSTL---CG 58

Query: 525 SHYDNVRINKPDEFDMVIEIGVP 593
            + D ++++ PDEFD++I +  P
Sbjct: 59  GYGDKLKVSIPDEFDLLIHLVFP 81


>AE013599-2117|AAF58101.2|  414|Drosophila melanogaster CG12970-PA,
           isoform A protein.
          Length = 414

 Score = 33.9 bits (74), Expect = 0.21
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 354 NLESLLADISVRYIQLKE--SDFELHYKVL-DTIFQNLHKKMKEIDPYYNRYSSMVHHAG 524
           NLE+++   + +Y+++KE    +  HY  L D ++     K   +     + S++    G
Sbjct: 4   NLENIVNQATAQYVKIKEHREPYTAHYNALKDKVYSEW--KSSAVLGKLLKGSTL---CG 58

Query: 525 SHYDNVRINKPDEFDMVIEIGVP 593
            + D ++++ PDEFD++I +  P
Sbjct: 59  GYGDKLKVSIPDEFDLLIHLVFP 81


>AY102684-1|AAM27513.1|  872|Drosophila melanogaster LD24134p
           protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 471 KEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFD 569
           KE+  YY++  ++ H + SHY++  +NK  EF+
Sbjct: 224 KELPKYYSKIHNLDHPSASHYED-ELNKALEFE 255


>AE014297-1234|AAF54579.2|  872|Drosophila melanogaster CG6621-PA
           protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 471 KEIDPYYNRYSSMVHHAGSHYDNVRINKPDEFD 569
           KE+  YY++  ++ H + SHY++  +NK  EF+
Sbjct: 224 KELPKYYSKIHNLDHPSASHYED-ELNKALEFE 255


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,676,809
Number of Sequences: 53049
Number of extensions: 540915
Number of successful extensions: 1459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)