Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1086
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    31   1.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.4  
AF016424-9|AAB65327.2|  530|Caenorhabditis elegans Udp-glucurono...    29   3.2  
AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical...    29   4.2  
Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    28   5.5  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical
           protein T19A5.3b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 417 ELHYKVLDTIFQNLHKKMKEID-PYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVP 593
           E   K ++  ++ L    K I+ P  N  SS   H+G HY   ++N P + + ++E+  P
Sbjct: 61  EARRKRIEARWKRLGINFKTINHPLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 120


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 417 ELHYKVLDTIFQNLHKKMKEID-PYYNRYSSMVHHAGSHYDNVRINKPDEFDMVIEIGVP 593
           E   K ++  ++ L    K I+ P  N  SS   H+G HY   ++N P + + ++E+  P
Sbjct: 129 EARRKRIEARWKRLGINFKTINHPLLNTESSESSHSGHHYTIRQLNAPKKVEKLVEVERP 188


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 457  FTRK*KKLIHTTTDIRAWYIMPGVTTTMCV*TNPMNSTW 573
            F R  + L   T D R  +    + TT+ V T+P NSTW
Sbjct: 2774 FPRTEENLYEITKDCRLLFNSDVINTTIPVVTSPANSTW 2812


>AF016424-9|AAB65327.2|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein61 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 548 YTHIVVVTP-GMMYHARISVVVWIN 477
           YTHI    P G+++HA+I   VW+N
Sbjct: 143 YTHIYSTCPLGLIHHAKIPSWVWLN 167


>AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical
           protein Y52B11A.10 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 318 ISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKK 467
           I DK+  N  +TNL ++   I+  Y  LK++ + L  + +D I     KK
Sbjct: 458 IIDKLAENLNLTNLFAIRTLIAYAYKSLKKTSWPLVTQKIDEIHSEFEKK 507


>Z72515-2|CAA96682.3|  329|Caenorhabditis elegans Hypothetical
           protein T11A5.2 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 647 SNFISLSFRLFVFLVEAKRHTYFDNHVEFIGFVYTHIVVVTPGMMYHARISVVVWINF 474
           S  I L   +  FL+ A    +  +   F G V  + V  TP   Y A++   V I F
Sbjct: 140 STIIGLLLAIVHFLIAALPLCFLYSQTRFDGAVMYYCVTATPSAPYSAQVGATVSICF 197


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -3

Query: 641 FISLSFRLFVFLVEAKR----HTYFDNHVEFIGFVYTHIVVVTPGMMYHARISVVVWINF 474
           FIS  F L   L + KR    H YF++ +  I F    I++V+  M+      +  ++NF
Sbjct: 90  FISSIFALIFVLQDLKRYLRFHIYFNSVITLIYFCKLIILLVSGDMVTSILCILCNFVNF 149

Query: 473 FHFLVKI 453
           F    +I
Sbjct: 150 FSVFYEI 156


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 381  SVRYIQLKESDFELHYKVLDT-----IFQNLHKKMKEIDPYYNRYSSMVHHAGS 527
            ++R   L E ++ + YK+ D      IF+NL KK++  +P +  Y+      G+
Sbjct: 1268 NIRVKDLTEKEYNI-YKIWDLPKLTEIFKNLKKKLEHSNPMFCHYADFKRRCGN 1320


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 335 RYFVANPFFAFRLWSPAVS 279
           +Y + N FF FR+ SPAVS
Sbjct: 413 QYSIVNDFFVFRVVSPAVS 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,615,096
Number of Sequences: 27780
Number of extensions: 295047
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)