Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1084
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.059
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   1.3  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   5.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 0.059
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 53  VNESSKLIAASTTSPIQPKPDVPTKDELS 139
           V+ES+ ++       IQP P +P+K+E+S
Sbjct: 156 VDESASVMTNGRIHGIQPSPTLPSKEEVS 184


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 77  AASTTSPIQPKPDVPTKDELSTETNTASPATTS 175
           AA  +  I P+P VPT +   T+T  + P   S
Sbjct: 384 AALKSDEIPPEP-VPTPEPQPTQTTESEPTQAS 415


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -2

Query: 276 FCVVTLKGVAVLNIELDAVVFGCDATAVPKMETAEV 169
           F ++ L       + +  ++ GCD  A    +TAE+
Sbjct: 210 FAIIHLSVFVYTLVSVILIIMGCDVVASNSRKTAEM 245


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 204 HHNQKLQHLAQ 236
           HH  KLQHL Q
Sbjct: 106 HHEIKLQHLHQ 116


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 199 GCSKNGDSRSRR 164
           GCS  G+ +SRR
Sbjct: 407 GCSYTGEQKSRR 418


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 192 PKMETAEVVAGDAVLVSVESSSFVGTSG 109
           P+M  +E+VA      S +S S V  +G
Sbjct: 172 PEMSDSEIVAKLVAYTSAQSHSSVERAG 199



 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3

Query: 309 YLGHHQPRPVSDQNHW 356
           YL H Q     D  HW
Sbjct: 332 YLKHEQQGAAPDYRHW 347


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 156 AVLVSVESSSFVGTSGFGWI 97
           A L S   ++  GTSG  W+
Sbjct: 407 ATLSSSSDTNRFGTSGLAWL 426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,817
Number of Sequences: 336
Number of extensions: 2412
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)