Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1084
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   2.6  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   4.5  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   4.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   4.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   4.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 348 FGHSLVVAGGVPNMEP--VADPPNIEFCVVTLK 256
           + H L+   G  N +   + DP NIEF  + +K
Sbjct: 186 WNHQLISYAGYKNPDGTIIGDPANIEFTELCMK 218


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 326 EHRIIPSHYIEQIPAPVYYGNFPPRPI 352


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 78  EHRIIPSHYIEQIPVPVYYGNFPPRPI 104


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 311 EHRIIPSHYIEQIPVPVYYGNFPPRPI 337


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +3

Query: 267 QHKIL---YLEDLRRVPYLGHHQPRPV 338
           +H+I+   Y+E +    Y G+  PRP+
Sbjct: 327 EHRIIPSHYIEQIPVPVYYGNFPPRPI 353


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 2   KQPDTPATSSTTSIFSAVNESSK 70
           ++PD PA+SS +S  ++V  S +
Sbjct: 587 EKPDKPASSSASSAPTSVCSSPR 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,622
Number of Sequences: 438
Number of extensions: 2769
Number of successful extensions: 21
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)