Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1084
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p... 36 0.016
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 33 0.084
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 33 0.084
At3g28790.1 68416.m03593 expressed protein 33 0.11
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 32 0.15
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 32 0.15
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 31 0.45
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa... 30 0.59
At1g05410.1 68414.m00549 expressed protein 30 0.59
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot... 29 1.4
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 2.4
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 28 2.4
At5g50050.1 68418.m06198 invertase/pectin methylesterase inhibit... 28 3.2
At5g04480.1 68418.m00447 expressed protein 28 3.2
At2g35140.1 68415.m04310 expressed protein ; expression supporte... 28 3.2
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain... 28 3.2
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 27 4.2
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 27 4.2
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 27 4.2
At3g19930.1 68416.m02523 sugar transport protein (STP4) identica... 27 4.2
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /... 27 4.2
At4g26610.1 68417.m03835 protein kinase, putative similar to pro... 27 5.5
At3g01910.1 68416.m00139 sulfite oxidase, putative similar to su... 27 5.5
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ... 27 5.5
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 27 5.5
At5g22680.1 68418.m02650 hypothetical protein 27 7.3
At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein si... 27 7.3
At3g17350.1 68416.m02217 expressed protein 27 7.3
At1g74970.1 68414.m08703 ribosomal protein S9 (RPS9) identical t... 27 7.3
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 7.3
At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ... 27 7.3
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 26 9.7
At5g57655.2 68418.m07204 xylose isomerase family protein contain... 26 9.7
At5g49390.1 68418.m06112 hypothetical protein 26 9.7
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 26 9.7
At3g54320.1 68416.m06003 ovule development protein, putative sim... 26 9.7
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 26 9.7
At2g43090.1 68415.m05348 aconitase C-terminal domain-containing ... 26 9.7
At1g79640.1 68414.m09286 protein kinase family protein contains ... 26 9.7
At1g79090.2 68414.m09222 expressed protein 11408 (cDNA not full... 26 9.7
At1g79090.1 68414.m09221 expressed protein 11408 (cDNA not full... 26 9.7
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-... 26 9.7
>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 315
Score = 35.5 bits (78), Expect = 0.016
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 KQPDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKP-DVPTK-DELSTETNTASPATT 172
KQPD ATS S V SK T PI PKP P K +L TET A + +
Sbjct: 167 KQPDLKATSQAASSNPQVRLQSKKPQLVTKEPISPKPLSSPRKQQQLQTETKEAKASVS 225
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 33.1 bits (72), Expect = 0.084
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 23 TSSTTSIFSAVNESSKLIAASTT--SPIQPKPDVPTKDELSTETNTASPATTSAVS 184
TSS + SA S+K A STT SP+ P +P +++ + +T+T A ++ VS
Sbjct: 90 TSSVSQPVSATTSSTKPAAPSTTQSSPVPASP-IPAQEQPAAQTDTYGQAASTLVS 144
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 33.1 bits (72), Expect = 0.084
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 23 TSSTTSIFSAVNESSKLIAASTT--SPIQPKPDVPTKDELSTETNTASPATTSAVS 184
TSS + SA S+K A STT SP+ P +P +++ + +T+T A ++ VS
Sbjct: 90 TSSVSQPVSATTSSTKPAAPSTTQSSPVPASP-IPAQEQPAAQTDTYGQAASTLVS 144
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 32.7 bits (71), Expect = 0.11
Identities = 31/128 (24%), Positives = 42/128 (32%)
Frame = +2
Query: 11 DTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSIF 190
DT +SS S + + ST +P P P PT + T S S
Sbjct: 265 DTTGSSSGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPAAGKTSEK 324
Query: 191 GTAVASQPKXXXXXXXXXXXXXXXVTTQNSIFGGSATGSIFGTPPATTSE*PKPLVLSAP 370
G+ AS K V+ GS +G + T+S P +P
Sbjct: 325 GSESASMKKESNSKSESESAASGSVSKTKETNKGS-SGDTYKDTTGTSSGSPSGSPSGSP 383
Query: 371 KPVTSVFG 394
P TS G
Sbjct: 384 TPSTSTDG 391
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 32.3 bits (70), Expect = 0.15
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSI 187
P TP + S T +S +S A STTS + P + K +T T +P S VS+
Sbjct: 44 PSTPRSDSGTGTYSLRCRTSTATAVSTTSSLPGTPKLKCK---TTTTGETTPRNRSLVSL 100
Query: 188 FGTAVAS 208
+ +S
Sbjct: 101 LTPSSSS 107
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 32.3 bits (70), Expect = 0.15
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Frame = +2
Query: 74 IAASTTSPIQPKPDV------PTKD-ELSTETNTASPAT-TSAVSIFGTAVASQPKXXXX 229
I+ S +P P P PT ST TN +P T T A S FGTA ++
Sbjct: 413 ISPSQPNPFSPSPAFGQTSANPTNPFSSSTSTNPFAPQTPTIASSSFGTATSN------- 465
Query: 230 XXXXXXXXXXXVTTQNSIFGG--SATGSIFGTPPATTSE*PKPLVLSAPKP----VTSVF 391
VT+ +++FG S T S+FG+ A + P PL S+ P +S+F
Sbjct: 466 ----FGSSPFGVTSSSNLFGSGSSTTTSVFGSSSAFGTTTPSPLFGSSSTPGFGSSSSIF 521
Query: 392 G 394
G
Sbjct: 522 G 522
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 30.7 bits (66), Expect = 0.45
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSA 178
P T ++SS+ S ++ N L S+ +P +T T++++PA TSA
Sbjct: 355 PQTASSSSSFSFGTSANSGFNLSTGSSAAPASSTSGAVFSIATTTTTSSSTPAATSA 411
>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 997
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/42 (45%), Positives = 19/42 (45%)
Frame = -2
Query: 435 TLALGTAVDTGTGVPNTDVTGFGALSTNGFGHSLVVAGGVPN 310
T G G G NT TGFG ST GFG S A G N
Sbjct: 169 TSGFGATNTPGFGATNT--TGFGGSSTPGFGASSTPAFGSTN 208
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 435 TLALGTAVDTGTGVPNTDVTGFGALSTNGFGHS 337
T A G + +G G NT GFGA +T GFG S
Sbjct: 161 TPAFGVSNTSGFGATNTP--GFGATNTTGFGGS 191
>At1g05410.1 68414.m00549 expressed protein
Length = 471
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 285 LEDLRRVPYLGHHQPRPVSDQNHWCLAHRNRSHQYSERLYLYRPQYL 425
LE +PY + P P D HW + R Y YLY P+YL
Sbjct: 25 LESGEGLPYAPENWPNP-GDTWHWKVGPRISGKGYFVDRYLYPPKYL 70
>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
similar to Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
contains Pfam profile PF01369: Sec7 domain
Length = 1698
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 41 IFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTE 145
IF AVNE++ L +S ++ D+P +D LS +
Sbjct: 1428 IFLAVNEAASLTLSSFMKTLRTMDDIPDEDTLSDQ 1462
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSI 187
P TP+ S T S + S T P+ P P PT S + P T S+
Sbjct: 85 PPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSV 144
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 123 QRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRLLVLQH 272
Q+M Q+ HQ++ L Q HH Q+ Q Q Q +L LQH
Sbjct: 712 QQMPQLQQQQQQHQQQQQQQHQLSQLQHHQQQQQQQQQQQQQHQLTQLQH 761
>At5g50050.1 68418.m06198 invertase/pectin methylesterase inhibitor
family protein low similarity to pollen-specific protein
Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
PF04043: Plant invertase/pectin methylesterase inhibitor
Length = 175
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 41 IFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSIFGTAVAS 208
++ AV L+ AS T I + + T+T A P TSA S F AVA+
Sbjct: 11 VYLAVLLPCLLVPASATKYIDAICHLVSDKAFCTKTLNAYPPATSATSTFEAAVAT 66
>At5g04480.1 68418.m00447 expressed protein
Length = 1050
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 361 KHQWFWSLTGRGWWCPKYGTRRRSSKYRI 275
+ +W W LTG W Y R R +YR+
Sbjct: 996 RERWLWPLTGEVHWKGVY-EREREERYRL 1023
>At2g35140.1 68415.m04310 expressed protein ; expression supported
by MPSS
Length = 879
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -2
Query: 405 GTGVPNTDVTG---FGALSTNGFGHSLVVAG 322
G G PN D+TG F A S GFG ++ G
Sbjct: 358 GLGAPNVDLTGSASFTANSNYGFGEDIIPFG 388
>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1353
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPD 115
PDT AT+S S+ ++V E +A I P PD
Sbjct: 185 PDTSATASIPSVKTSVRERGVSLADKKDRIITPHPD 220
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 123 QRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL---LVLQHKILYLED 293
Q+ QQK +++ LEQP Q LQ L Q Q L L H L +
Sbjct: 723 QQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQQQQQQFLSPQSQLPHHQLQSQQ 782
Query: 294 LRRVPYLGHHQPRPVSDQNH 353
L+++P L P S N+
Sbjct: 783 LQQLPTLSQGHQFPSSCTNN 802
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Frame = +3
Query: 84 QLLHRS--SRNLMCLQRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL 257
QLLH S + + QQ+ L Q++L +Q+ Q L Q Q +L
Sbjct: 508 QLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQL 567
Query: 258 LVLQHKILYLE----DLRRVPYLGHHQPRPVSDQNH 353
+ L + LR P H P+P Q H
Sbjct: 568 QQQHQQPLQQQTQQQQLRTQPLQSHSHPQPQQLQQH 603
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 123 QRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL---LVLQHKILYLED 293
Q+ QQK +++ LEQP Q LQ L Q Q L L H L +
Sbjct: 722 QQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQQQQQQFLSPQSQLPHHQLQSQQ 781
Query: 294 LRRVPYLGHHQPRPVSDQNH 353
L+++P L P S N+
Sbjct: 782 LQQLPTLSQGHQFPSSCTNN 801
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Frame = +3
Query: 84 QLLHRS--SRNLMCLQRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL 257
QLLH S + + QQ+ L Q++L +Q+ Q L Q Q +L
Sbjct: 507 QLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQL 566
Query: 258 LVLQHKILYLE----DLRRVPYLGHHQPRPVSDQNH 353
+ L + LR P H P+P Q H
Sbjct: 567 QQQHQQPLQQQTQQQQLRTQPLQSHSHPQPQQLQQH 602
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 123 QRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL---LVLQHKILYLED 293
Q+ QQK +++ LEQP Q LQ L Q Q L L H L +
Sbjct: 723 QQTLLQQKAHQAQAQQIFQQSLLEQPHIQFQLLQRLQQQQQQQFLSPQSQLPHHQLQSQQ 782
Query: 294 LRRVPYLGHHQPRPVSDQNH 353
L+++P L P S N+
Sbjct: 783 LQQLPTLSQGHQFPSSCTNN 802
Score = 26.6 bits (56), Expect = 7.3
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Frame = +3
Query: 84 QLLHRS--SRNLMCLQRMNFQQKLTLHHQRRLLLSPFLEQPSHHNQKLQHLAQYSVQLRL 257
QLLH S + + QQ+ L Q++L +Q+ Q L Q Q +L
Sbjct: 508 QLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNNNQSQSQQQQQLLQQQQQQQL 567
Query: 258 LVLQHKILYLE----DLRRVPYLGHHQPRPVSDQNH 353
+ L + LR P H P+P Q H
Sbjct: 568 QQQHQQPLQQQTQQQQLRTQPLQSHSHPQPQQLQQH 603
>At3g19930.1 68416.m02523 sugar transport protein (STP4) identical
to GB:S25009 GI:16524 from [Arabidopsis thaliana]
Length = 514
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 393 PNTDVTGF-GALSTNGFGHSLVVAGGVPNMEP 301
P VT F GA FG+ L ++GGV +MEP
Sbjct: 21 PKVFVTCFIGAFGGLIFGYDLGISGGVTSMEP 52
>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 491
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +2
Query: 11 DTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASP 163
DT A T + VN S + S T I D K+E STETN P
Sbjct: 378 DTSA-GGTVEVSETVNHSHEESTESVT--ITSSKDADKKEEASTETNETVP 425
>At4g26610.1 68417.m03835 protein kinase, putative similar to
protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
Length = 506
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVP--TKDELSTETNTASPATTSAV 181
P+T +S + S+ + ++ S ++ + +S + +V K + S ++NT P+T+S +
Sbjct: 23 PETSYSSQSVSVNTLADQVSSTLSFAPSSDSKTGGEVKFNEKSDQSGKSNTCRPSTSSDI 82
Query: 182 S 184
S
Sbjct: 83 S 83
>At3g01910.1 68416.m00139 sulfite oxidase, putative similar to
sulfite oxidase GB:3212610 SP|P07850 [Gallus gallus],
Moco containing protein [Oryza sativa (japonica
cultivar-group)] GI:22759584; contains Pfam profiles:
PF00174: Oxidoreductase molybdopterin binding domain and
PF03404: Mo-co oxidoreductase dimerisation domain
Length = 393
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 219 LQHLAQYSVQLRLLVLQHKILYLEDLRRVP 308
+ HL YSV L L+ + L+++D+R +P
Sbjct: 59 VDHLQSYSVTLTGLIQNPRKLFIKDIRSLP 88
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 664
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 20 ATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSIFGTA 199
+TSST+S+ + + LI S P K P K+++S + + S FGT+
Sbjct: 594 STSSTSSMVD-LKQKGVLIDTSIAGPSGLKRSEPVKNKVSEKQGSVRSRLKSHYFCFGTS 652
Query: 200 VAS 208
S
Sbjct: 653 ALS 655
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 27.1 bits (57), Expect = 5.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -2
Query: 411 DTGTGVPNTDVTGFGALSTNGFGHSLVVAGGVPNMEPVADP-PNIEFCVVTLKGVAVLNI 235
D G V ++D+T LS G G ++ AG N DP P F + G A+L+
Sbjct: 151 DVGFHVEDSDITLNVCLSKQGEGGEILFAGARCNKHMDIDPKPEEYFDYCHIPGQAILH- 209
Query: 234 ELDAVVFGCDATA 196
V G ATA
Sbjct: 210 -RGCHVHGARATA 221
>At5g22680.1 68418.m02650 hypothetical protein
Length = 235
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 81 LQLLHRSSRNLMCLQRMNFQQKLTLH 158
LQ +SSRNL C++ + F++K+ H
Sbjct: 185 LQKTLQSSRNLFCVRAVPFEKKIYSH 210
>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein
similar to tapetum specific protein GI:3885492 from [Zea
mays]
Length = 536
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 67 GRFVHGTEYRSCTRCGWSI 11
GRFVHG E R+ RC W++
Sbjct: 75 GRFVHGGEVRAKKRC-WTL 92
>At3g17350.1 68416.m02217 expressed protein
Length = 278
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 289 SKYRILCCNTKRRSCTEY*ARCCSF 215
++YR LC N SC E + C SF
Sbjct: 136 NRYRNLCFNAAGHSCDELYSSCTSF 160
>At1g74970.1 68414.m08703 ribosomal protein S9 (RPS9) identical to
ribosomal protein S9 [Arabidopsis thaliana] GI:5456946
Length = 208
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +2
Query: 2 KQPDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAV 181
++P+T + S+F+ +S++ + S T+ + P+ EL + P +A
Sbjct: 22 QRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEEIVELKKYVKSRLPGGFAAQ 81
Query: 182 SIFGT 196
I GT
Sbjct: 82 KIIGT 86
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 8 PDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSA 178
P P++S +++ S+++ SS + SP P P P+ LS+ + + SP+ S+
Sbjct: 38 PSPPSSSPSSAPPSSLSPSSP--PPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSS 92
>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 899
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 144 KLTLHHQRRL---LLSPFLEQPSHHNQKLQHLAQYSVQLRLLVLQHKILYL 287
K TLH +RL + S +E+ S +N + H+ S + L+H LYL
Sbjct: 376 KYTLHDWKRLSENIGSHIVERTSGNNSSIDHVLSVSFEELPNYLKHCFLYL 426
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 53 VNESSKLIAASTTSPIQPKPDVPTKDELST 142
+ ++ +IAAS TSP+Q KP+ +D T
Sbjct: 151 IEDAESMIAASKTSPLQ-KPEPKVRDPEKT 179
>At5g57655.2 68418.m07204 xylose isomerase family protein contains
similarity to Xylose isomerase (EC 5.3.1.5)
(Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
Length = 477
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 44 FSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTAS 160
F A K I T I+PKP PTK + + TA+
Sbjct: 254 FEAAVAYKKKIGFKGTLLIEPKPQEPTKHQYDWDAATAA 292
>At5g49390.1 68418.m06112 hypothetical protein
Length = 422
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 17 PATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTAS 160
PA++S+T + A +S AAS+ S Q + P +++ ++T S
Sbjct: 243 PASASSTQMEEADPHNSNATAASSASSTQMEDAEPYNPDVTAASSTCS 290
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 81 LQLLHRSSRNLMCLQRMNFQQKLTL-HHQRRLLLSPFLEQPS 203
+Q+ + + +L L+ ++ ++K +L +++RRLLLSP + + S
Sbjct: 54 IQIPPKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETS 95
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 26.2 bits (55), Expect = 9.7
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Frame = +2
Query: 32 TTSIFSAVNESSKLIAASTTSPIQ---PKPDVPTKDELSTET-----NTASPATTSAVSI 187
TTS S+ SS + +T+SPIQ P+P + + S+ + N SPA+T SI
Sbjct: 6 TTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSPASTRRSSI 65
Query: 188 F 190
+
Sbjct: 66 Y 66
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 300 VADPPNIEFCVVTLKGVAVLNIELDAVVF--GCDATAVPKMETAEVVAGDAVLV 145
VA PP F V L+G+ ELD V F G D V + V G+A V
Sbjct: 106 VAPPPPPPFPAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCV 159
>At2g43090.1 68415.m05348 aconitase C-terminal domain-containing
protein contains Pfam profile PF00694: Aconitase
C-terminal domain
Length = 251
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 231 LDAVVFGCDATAVPKMETAEVVAGDAVLVSVESSSFVGTSGFGWIGEVVEA 79
LD+ V CD + T E+ GD++L++ + G G V++A
Sbjct: 183 LDSEVRVCDECTTGDVATVELREGDSILINHTTGKEYKLKPIGDAGPVIDA 233
>At1g79640.1 68414.m09286 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 694
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 207 DATAVPKMETAEVVAGDAVLVSVESSSFVGTS 112
DAT++P + E++AG +VL + G S
Sbjct: 458 DATSIPTNQPTEIIAGSSVLADGNGAPNKGES 489
>At1g79090.2 68414.m09222 expressed protein 11408 (cDNA not
full-length)
Length = 793
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 225 HLAQYSVQLRLLVLQHKILYLEDLRRVPYLGHHQPRPVSDQNHWCLA-HRNRSHQYSERL 401
HL + R H L +E L RVP+ +PRP+ + + A N H+ +++
Sbjct: 441 HLRDLQQRARSNNEPHAFLQVEALGRVPFSSIRRPRPLLEVDPPNSAKFGNAEHKPTDKP 500
Query: 402 YLYRPQYLARV 434
P ARV
Sbjct: 501 LDQEPMLAARV 511
>At1g79090.1 68414.m09221 expressed protein 11408 (cDNA not
full-length)
Length = 793
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 225 HLAQYSVQLRLLVLQHKILYLEDLRRVPYLGHHQPRPVSDQNHWCLA-HRNRSHQYSERL 401
HL + R H L +E L RVP+ +PRP+ + + A N H+ +++
Sbjct: 441 HLRDLQQRARSNNEPHAFLQVEALGRVPFSSIRRPRPLLEVDPPNSAKFGNAEHKPTDKP 500
Query: 402 YLYRPQYLARV 434
P ARV
Sbjct: 501 LDQEPMLAARV 511
>At1g31410.1 68414.m03847 putrescine-binding periplasmic
protein-related similar to Chain A, Putrescine Receptor
(Potf) (GI:3891734) [Escherichia coli]; similar to Chain
C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
coli]; similar to Putrescine-binding periplasmic protein
precursor. (Swiss-Prot:P31133) [Escherichia coli]
Length = 524
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 26 SSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTET 148
S++T +F + SS + + ++ I P P V T++E++TET
Sbjct: 47 SASTVLF--IGLSSLRVCSPASARILPPPIVVTENEINTET 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,996
Number of Sequences: 28952
Number of extensions: 212942
Number of successful extensions: 899
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -