Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1081
         (350 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   0.91 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   4.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   6.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   6.4  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 97  VHRDLRKWARQAENLPRKNGNQEI*KISNRSWILITIK 210
           +H   R+  +   NL +KN   E+  +    W+L+  K
Sbjct: 374 IHEKARENLKHHANLRQKNQKGEVTVLEIEDWVLLKNK 411


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 293 RDGPNALTPPKQTPEW 340
           R+  NA  PP++ P W
Sbjct: 5   RNTGNAGAPPQEMPTW 20


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 40  CTVEGYRRDREAACSFY 90
           CT  GY RD +    FY
Sbjct: 422 CTKAGYVRDPDDCSIFY 438


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 174 DLKQELDIDYHKVTPEELY 230
           D+K  L   +H  TPE+L+
Sbjct: 489 DVKIFLPFRFHIYTPEDLF 507


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,354
Number of Sequences: 336
Number of extensions: 1717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)