Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1081
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   0.85 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   2.6  
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    25   3.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   3.4  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   4.5  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   4.5  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   4.5  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    24   6.0  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 82  SFYPPVHRDLRKWARQAENLP 144
           S+ PP++ D R W    ENLP
Sbjct: 479 SYDPPLYNDTRAWMIYEENLP 499


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260
           +K KP    D    +D+D HK + EE+   F+ TR ++
Sbjct: 120 EKPKPEGSTDAATSMDVDLHKKS-EEVNWLFENTRTVS 156


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 145 AGGFLLVSPIFVSLYVQADKRNKPPLGLVCI 53
           A   L + PI  S +V   K+ +PP+G  CI
Sbjct: 55  AVAILAIVPIDGSPHVLCQKQFRPPIGKFCI 85


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEE 224
           K  E S KP + + KP +   L +  D    K  P+E
Sbjct: 824 KAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKE 860


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 272 KAKENLERDGPNALTPPKQTPEW 340
           +  +NL  D P    PPK T  W
Sbjct: 173 RQNQNLAFDSPTEALPPKPTTPW 195


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   VKGIS**LEQSHPAPLRDTDETERRLVPFIR 94
           +KG S  L  S P PL+D ++ ++ + P I+
Sbjct: 125 LKGQSKELSDSGPLPLKDEEDDDQMVSPVIK 155


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 124 RQAENLPRKNGNQEI*KISNRSWILITIKSLLRNS 228
           R AE   +   N+E+ KIS+R   ++  +S+L+NS
Sbjct: 424 RIAEESKQLALNKEVRKISSREIKMLDARSMLKNS 458


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 43  TVEGYRRDREAACSFYPPVHRDLRKWARQAENLPRKNGNQEI*KISNRSWI 195
           T+E +R+ +E    F     + LR W R A  + R+   ++  ++    WI
Sbjct: 48  TIENFRQAKEHKMRFETECDQKLRNWKRLA--IEREVSEEQSGEVQFPRWI 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,729
Number of Sequences: 5004
Number of extensions: 29521
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)