BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1081 (350 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 0.85 SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 25 2.6 SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 25 3.4 SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 3.4 SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 4.5 SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 25 4.5 SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 4.5 SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 24 6.0 >SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces pombe|chr 1|||Manual Length = 802 Score = 27.1 bits (57), Expect = 0.85 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 82 SFYPPVHRDLRKWARQAENLP 144 S+ PP++ D R W ENLP Sbjct: 479 SYDPPLYNDTRAWMIYEENLP 499 >SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 371 Score = 25.4 bits (53), Expect = 2.6 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260 +K KP D +D+D HK + EE+ F+ TR ++ Sbjct: 120 EKPKPEGSTDAATSMDVDLHKKS-EEVNWLFENTRTVS 156 >SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosaccharomyces pombe|chr 2|||Manual Length = 205 Score = 25.0 bits (52), Expect = 3.4 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 145 AGGFLLVSPIFVSLYVQADKRNKPPLGLVCI 53 A L + PI S +V K+ +PP+G CI Sbjct: 55 AVAILAIVPIDGSPHVLCQKQFRPPIGKFCI 85 >SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1310 Score = 25.0 bits (52), Expect = 3.4 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = +3 Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEE 224 K E S KP + + KP + L + D K P+E Sbjct: 824 KAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKE 860 >SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 24.6 bits (51), Expect = 4.5 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = +2 Query: 272 KAKENLERDGPNALTPPKQTPEW 340 + +NL D P PPK T W Sbjct: 173 RQNQNLAFDSPTEALPPKPTTPW 195 >SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 24.6 bits (51), Expect = 4.5 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 2 VKGIS**LEQSHPAPLRDTDETERRLVPFIR 94 +KG S L S P PL+D ++ ++ + P I+ Sbjct: 125 LKGQSKELSDSGPLPLKDEEDDDQMVSPVIK 155 >SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|Schizosaccharomyces pombe|chr 2|||Manual Length = 784 Score = 24.6 bits (51), Expect = 4.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +1 Query: 124 RQAENLPRKNGNQEI*KISNRSWILITIKSLLRNS 228 R AE + N+E+ KIS+R ++ +S+L+NS Sbjct: 424 RIAEESKQLALNKEVRKISSREIKMLDARSMLKNS 458 >SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe|chr 3|||Manual Length = 396 Score = 24.2 bits (50), Expect = 6.0 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +1 Query: 43 TVEGYRRDREAACSFYPPVHRDLRKWARQAENLPRKNGNQEI*KISNRSWI 195 T+E +R+ +E F + LR W R A + R+ ++ ++ WI Sbjct: 48 TIENFRQAKEHKMRFETECDQKLRNWKRLA--IEREVSEEQSGEVQFPRWI 96 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,541,729 Number of Sequences: 5004 Number of extensions: 29521 Number of successful extensions: 89 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 89 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 106195544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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