Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1081
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814... 29 1.0
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 29 1.4
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 28 1.8
09_02_0429 + 9306862-9306970,9307834-9307942,9308538-9308616,930... 27 3.1
09_01_0024 + 438288-438542,439020-439069,440096-440351 27 4.1
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 27 4.1
01_03_0174 - 13442458-13442657,13443292-13443472 26 7.2
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007 26 9.6
06_01_0642 + 4658771-4659248,4659322-4660208 26 9.6
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084... 26 9.6
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 26 9.6
01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305 26 9.6
>01_06_0366 -
28779899-28780543,28780813-28781076,28781165-28781431,
28781546-28781774,28781868-28781985,28782229-28782486,
28782585-28782858,28782950-28783475,28784289-28784527,
28784626-28784847,28784912-28784914,28785124-28785299,
28786147-28786201,28786288-28786557
Length = 1181
Score = 29.1 bits (62), Expect = 1.0
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 35 HPAPLRDTDETERRLVPFIRLYIETYENGRDKQKTSREKTETRRFRRSQT 184
H A ++D D +L IRL ET+ + R K SR K+ + FRRS+T
Sbjct: 591 HDALVKDPDGAYSQL---IRLQ-ETHRDERHKLPDSRSKSTSLSFRRSRT 636
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 159 PGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260
P ED+ Q +D+D V PE++ ++F T K+A
Sbjct: 427 PNSAEDI-QNVDVDVSDVLPEDVSKKFSVTCKLA 459
>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 81 FLLSACT*RLTKMGETSRKPPAKKRKPG 164
FL S +LT +GET +KPP + PG
Sbjct: 1081 FLASLEDPKLTSLGETEKKPPIEILPPG 1108
>09_02_0429 +
9306862-9306970,9307834-9307942,9308538-9308616,
9308806-9308922,9309185-9309314,9311071-9311111
Length = 194
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 126 TSRKPPAKKRKPGDLEDLKQELDIDYHKVT 215
T+ +PPAKK+ PG+L K +++ K T
Sbjct: 18 TNGRPPAKKQSPGELRLHKDIAELNLPKKT 47
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 153 RKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT*KETAPMLLHHLNKH 332
R D + KQ + + + E L + +RT K L QK+K+ KE ++ +
Sbjct: 110 RMDADYQKRKQMAEFELRR--EERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNNGGEQ 167
Query: 333 PNG 341
PNG
Sbjct: 168 PNG 170
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 135 KPPAKKRKPGDLEDLKQELDIDYHKVT 215
KPPAKK+ PG+L K +++ K T
Sbjct: 324 KPPAKKQSPGELRLHKDIAELNLPKST 350
>01_03_0174 - 13442458-13442657,13443292-13443472
Length = 126
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 31 VPPCTVEGYRRDREAAC 81
VPP EG RR R AAC
Sbjct: 33 VPPAAAEGERRGRLAAC 49
>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
Length = 603
Score = 25.8 bits (54), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 151 FFAGGFLLVSPIFVSLYVQADKR-NKPPLGLVCIPQRCRVGLL 26
FF G LL PI+ L V +R P GL + QR VGL+
Sbjct: 398 FFVGSILLTVPIYDRLVVPVARRATGNPHGLTPL-QRIGVGLV 439
>06_01_0642 + 4658771-4659248,4659322-4660208
Length = 454
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 161 WFPFFRGRFSACLAHFRKSLCTGG*KEQAASRS 63
W P + G SA +AH R ++AASR+
Sbjct: 132 WVPVWTGASSALVAHLRTDALRDDVGDEAASRA 164
>04_04_0209 +
23607749-23607893,23607990-23608043,23608156-23608433,
23609524-23609894,23610033-23610096,23610472-23610603
Length = 347
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 123 ETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQR-FKRTRKMALVMQKRKRT*KET 299
ETS P+K P L+D++++L ++ E++ +R KRT K A ++ + T
Sbjct: 224 ETSLVTPSKPMDPVLLDDMEKKLSSSIEQI--EKMVRRNLKRTPKAAAAQPSKRAIQRRT 281
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 333 GVCLGGVRALGPSLSKFSFAF 271
GVC GG++ P L + ++AF
Sbjct: 510 GVCFGGLKGYEPRLIEMAYAF 530
>01_04_0096 - 15982944-15984066,15984296-15984949,15985037-15985305
Length = 681
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 59 DETERRLVPFIRLYIETYENGRDKQKTSREKTE 157
++ ++++P R+Y+E+Y + KQK++R E
Sbjct: 639 EKITQKVIPLYRMYLESYSD--KKQKSARFNVE 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,130
Number of Sequences: 37544
Number of extensions: 209204
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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