Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1081
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 44 5e-05
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 37 0.004
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12) 29 0.80
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 29 0.80
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 28 2.4
SB_26818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23) 27 5.7
SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05) 27 5.7
SB_23117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36) 27 5.7
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_26922| Best HMM Match : DivIC (HMM E-Value=8.9) 26 7.5
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 26 7.5
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 7.5
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 26 7.5
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 26 9.9
SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 26 9.9
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 43.6 bits (98), Expect = 5e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +2
Query: 227 LPKI*THPENGLSHAKAKENLERDGPNALTPPKQTPEWV 343
+ ++ T+ + GL+ +A L+RDGPNALTP TPEW+
Sbjct: 91 MTRLDTNVQTGLTDEEAAIRLKRDGPNALTPTPTTPEWL 129
Score = 43.2 bits (97), Expect = 6e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 114 KMGETSRKPPAKKRKPGD--LEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT 287
K GE + AKK+K +E+LKQELD+D+H++T EEL R + L ++
Sbjct: 51 KAGEKKQGKRAKKKKDQKEKMEELKQELDVDWHRITVEELMTRLDTNVQTGLTDEEAAIR 110
Query: 288 *KETAPMLL 314
K P L
Sbjct: 111 LKRDGPNAL 119
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 129 SRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQR 236
S++ K K L+DLKQEL++D+HKV E L R
Sbjct: 54 SKREKKKGNKEKKLDDLKQELEVDWHKVPLEALVNR 89
>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 31.1 bits (67), Expect = 0.26
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 106 DLRKWARQAENLPRKNGNQEI*KISNRSWILITIKSLL---RNSTKDLNAPGKWP*SCKS 276
D+ +W R+ + + I ISN SWIL+ + LL R + L + S S
Sbjct: 4 DVNQWTRKIKIMFTSEIPSNISAISNLSWILVGLACLLQEVRRKPQPLKDKRIYSRSSLS 63
Query: 277 ERELRKRRPQCSYTT*TNTRM 339
+R ++RP TT TN R+
Sbjct: 64 DRS--RKRPAPITTTVTNHRL 82
>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
Length = 622
Score = 29.5 bits (63), Expect = 0.80
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 209 FMVI-NIQLLFEIF*ISWFPFFRGRFSACLAH 117
F+V+ NI++L + + I + FFRG ++ CL H
Sbjct: 77 FLVLFNIEILLKFYTIGFKDFFRGFWNCCLYH 108
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 29.5 bits (63), Expect = 0.80
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 23 LEQSHPAPLRDTDETERRLVPFIRLYIETYENGRDKQKTSREKTETRR 166
L + P D + T PF+ +Y + NGRD Q +++K+ R
Sbjct: 506 LSRKRPDNSLDRNNTTVNFQPFLAIYYDPRRNGRDCQPHAQDKSPPPR 553
>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 248 PENGLSHAKAKENLERDGPNALTP 319
P N LSH EN GP +LTP
Sbjct: 551 PSNALSHHDVPENKAPGGPTSLTP 574
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDY-HKVTPEELYQRFKR 245
K +TSRKPP RK D D + + DY KV +Y +KR
Sbjct: 149 KAAKTSRKPPPPPRKIFDYLD-RYVIGQDYAKKVLAVAVYNHYKR 192
>SB_26818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 201 YHKVTPEELYQRFKRTRKMALVMQKRKRT 287
+ +T E LY R+KRTRK + R R+
Sbjct: 30 FDDLTSETLYSRWKRTRKHCTGKRSRNRS 58
>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.1 bits (57), Expect = 4.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 349 KLHPFGCLFRWCKSIGAV 296
++H GCL WC+S+G +
Sbjct: 180 RVHDRGCLCPWCQSLGRI 197
>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
Length = 1268
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTP 218
K E+ PP PGD E+ +E D H++TP
Sbjct: 1016 KRVESDNGPPFN---PGDYEEFAKEEGFDPHRITP 1047
>SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 206 MVINIQLLFEIF*ISWFPFF 147
+++ I L+ +F ISW PFF
Sbjct: 190 VIVTIALVIALFVISWLPFF 209
>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
Length = 435
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 50 RDTDETERRLVPFIRLYIETYENGRDKQKTSREKTET 160
+DT ++ +R++P + Y RDKQ T+++K +T
Sbjct: 376 KDTRKS-KRIIPINKTLNIPYAGERDKQNTTQDKIDT 411
>SB_23117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 47 LRDTDETERRLVPFIRLYIETYENGRDKQKTSREKTETRRFRRSQ 181
L D D+ +R V + L + +G ++ K RRF RS+
Sbjct: 20 LEDADQKGKRAVHLVHLNVLRGAHGHQHREDVLRKVRVRRFSRSR 64
>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
Length = 942
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 111 TKMGETSRKPPAKKRKPGDLEDLKQELD 194
TK GE+ P K DL+ +KQ D
Sbjct: 392 TKKGESQDNKPVSMEKESDLDSIKQSKD 419
>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 88 YPPVHRDLRKWARQAENLPRKNGNQEI*KISNRS 189
YP H ++ + + A+N+ RKN N + ++ RS
Sbjct: 732 YPQAHGEVERAVQTAKNILRKNTNPHLGLLAYRS 765
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 180 KQELDIDYHKV--TPEELYQRFKRTRKMALVMQKRKR 284
++++ +D H + +PEE+ +R +RTR+ + +K K+
Sbjct: 1175 RKQITLDKHAIYHSPEEIRKRQERTREKRMTEKKDKK 1211
>SB_26922| Best HMM Match : DivIC (HMM E-Value=8.9)
Length = 191
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 187 SWILITIKSLLRNSTKDLNAPGKWP*SCKSERELRKRRPQCSY 315
SW L+ +S++ + TK PG P + S ++ +K+R Y
Sbjct: 29 SWSLVRYESVMLSRTKPAMGPGSGP-TVSSAKDGKKKRKLPKY 70
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +1
Query: 22 TRAVPPCTVEGYRRDREAACSFYPPVHRDLRKWARQAENLPRKNGNQEI*KISNRSW 192
T+A PP V YRR + A + R W+ + + + NQ ++ + W
Sbjct: 86 TKAPPPNMVYDYRRRQYVAVNHVQAQPRQYNTWSASSGLVSDRTQNQPTDRMDHVKW 142
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 219 EELYQRFKRTRKMALVMQKRKRT 287
E Y R +++RK L ++KRKRT
Sbjct: 152 ERGYLRLRKSRKSTLDLEKRKRT 174
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 23 LEQSHPAPLRDTDETERRLVPFIRLYIETYENGR 124
L +++ + D+ + + VP+I L I T +NGR
Sbjct: 1245 LRETNKLHVADSSKIDYESVPYIHLTISTTDNGR 1278
>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 854
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 217 LRNSTKDLNAPGKWP*SCKSERELRKRRPQ 306
+R+ L PG WP +++ RK RPQ
Sbjct: 719 IRSGLLPLQTPGAWPPCRPWQQKRRKTRPQ 748
>SB_10144| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 701
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 135 KPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQR 236
K P K++KP E+ ++EL + HK + +R
Sbjct: 52 KKPKKRKKPSSEENWQEELADELHKPVKKTFTRR 85
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 19 ITRAVPPCTVEGYRRDREAACSFYPPVHRDLRK 117
I +P C EGYR R+ A + +P VH + K
Sbjct: 798 INLEIPLCHTEGYR--RKIATNHHPAVHGESDK 828
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 38 PAPLRDTDETERRLVPFIRLYIETYENGRDKQKTSREKTETRRFRRSQTGAG 193
PAP ++ R +L E E R KQ+ +E+T ++ RR + G
Sbjct: 887 PAPKQEKSAGRVRKSELTQLLEEVKEKQRRKQRGEKEETAQQKERRERRKYG 938
>SB_44570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 168 LEDLKQELDIDYHKVTPEELYQRFKR 245
+ED L +D H VT +ELY+ +R
Sbjct: 161 VEDKGLGLAVDIHTVTADELYRTIRR 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,998
Number of Sequences: 59808
Number of extensions: 238608
Number of successful extensions: 732
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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