Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1081
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr...    54   2e-08
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p...    54   2e-08
Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical pr...    52   9e-08
U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alp...    52   9e-08
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical...    36   0.008
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    30   0.54 
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    30   0.54 
AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical ...    28   1.6  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming ...    27   5.0  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z49910-7|CAA90124.4|  384|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    26   8.7  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    26   8.7  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    26   8.7  

>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +2

Query: 242 THPENGLSHAKAKENLERDGPNALTPPKQTPEWVK 346
           T  +NG+S A+A   L RDGPNALTPPKQT +W+K
Sbjct: 73  TSEKNGISEAEATNRLNRDGPNALTPPKQTSKWIK 107



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRK 254
           KK+    LEDLK+++ ID H++  + L++R+  + K
Sbjct: 41  KKKTNKSLEDLKKDVVIDDHEIPLDALFKRYTTSEK 76


>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
           protein C01G12.8 protein.
          Length = 1049

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +2

Query: 242 THPENGLSHAKAKENLERDGPNALTPPKQTPEWVK 346
           T  +NG+S A+A   L RDGPNALTPPKQT +W+K
Sbjct: 73  TSEKNGISEAEATNRLNRDGPNALTPPKQTSKWIK 107



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +3

Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRK 254
           KK+    LEDLK+++ ID H++  + L++R+  + K
Sbjct: 41  KKKTNKSLEDLKKDVVIDDHEIPLDALFKRYTTSEK 76


>Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical
           protein B0365.3 protein.
          Length = 996

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 21/36 (58%), Positives = 29/36 (80%)
 Frame = +2

Query: 242 THPENGLSHAKAKENLERDGPNALTPPKQTPEWVKF 349
           T+ E GL+  KA+E L ++GPNAL+PP+ TPEW+KF
Sbjct: 35  TNLETGLTRQKAQEVLAKNGPNALSPPETTPEWIKF 70



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +3

Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT*KETAPMLL 314
           KK K  +L DLKQE+ +D H V  EEL  R     +  L  QK +    +  P  L
Sbjct: 3   KKDKKQELHDLKQEVKMDEHIVPIEELVARLGTNLETGLTRQKAQEVLAKNGPNAL 58


>U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alpha
           subunit protein.
          Length = 996

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 21/36 (58%), Positives = 29/36 (80%)
 Frame = +2

Query: 242 THPENGLSHAKAKENLERDGPNALTPPKQTPEWVKF 349
           T+ E GL+  KA+E L ++GPNAL+PP+ TPEW+KF
Sbjct: 35  TNLETGLTRQKAQEVLAKNGPNALSPPETTPEWIKF 70



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +3

Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT*KETAPMLL 314
           KK K  +L DLKQE+ +D H V  EEL  R     +  L  QK +    +  P  L
Sbjct: 3   KKDKKQELHDLKQEVKMDEHIVPIEELVARLGTNLETGLTRQKAQEVLAKNGPNAL 58


>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
           protein C02E7.1 protein.
          Length = 1050

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +2

Query: 257 GLSHAKAKENLERDGPNALTPPKQTPEWVKF 349
           GLS   A E LE DG NAL+PPK    W  F
Sbjct: 66  GLSKQVAAERLESDGRNALSPPKVISNWKLF 96


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 257 GLSHAKAKENLERDGPNALTPPK 325
           GL+  +A + L+ DG NAL+PPK
Sbjct: 66  GLTKQEAAQKLKTDGKNALSPPK 88


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 257 GLSHAKAKENLERDGPNALTPPK 325
           GL+  +A + L+ DG NAL+PPK
Sbjct: 66  GLTKQEAAQKLKTDGKNALSPPK 88


>AL032618-4|CAB63367.1|  353|Caenorhabditis elegans Hypothetical
           protein Y42A5A.4 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +3

Query: 108 LTKMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT 287
           + K  ET   P  KK    ++  LKQ   + +  +    L + FKR RK+ LV +   RT
Sbjct: 32  IKKFVETEDDPHIKKIALREIRMLKQ---LKHQNLVG--LIEVFKRNRKLHLVFELCDRT 86

Query: 288 *KETAPMLLHHLNKHPNG 341
                  +LH L K+P+G
Sbjct: 87  -------VLHELEKNPHG 97


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 135 KPPAKKRKPGDLEDLKQELDIDYHKVTP 218
           K  A+K K  DL+D  Q+   DY ++TP
Sbjct: 824 KDVAEKAKDTDLKDYMQDYQADYTELTP 851


>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
           protein C38D9.3 protein.
          Length = 1496

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 227 LPKI*THPENGLSHAKAKENLER-DGPNALTPPKQTPEWVK 346
           LP+I  HP+  +  A+AK+ L+R D    L   KQ  +  K
Sbjct: 104 LPEIINHPQMDVMRAEAKKELDRLDADRILMKIKQDSDLFK 144


>AF016424-6|AAB65333.1|  366|Caenorhabditis elegans Transforming
           growth factor betafamily protein 2 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 254 NGLSHAKAKENLERDGPNALTPPKQTP 334
           N  SHA  +  L R  PN+ TP K  P
Sbjct: 307 NATSHAIVQSTLHRVRPNSTTPAKCAP 333


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 138 PPAKKRKPGDLEDLKQELDIDYHKVTPEELYQ 233
           PPAK  KP D+   K E +    +VTP+  ++
Sbjct: 844 PPAKDEKPKDVNVKKAETEKPKTEVTPKPAHK 875


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEE 224
           K  +  R+   K++KPG++E+ +Q  +  Y   TP++
Sbjct: 801 KTEDLLREERQKEQKPGEIEEPQQPAESLYSTRTPQQ 837


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  REAACSFYPPVHRDLRKWARQAENL 141
           R   C++  P+H DLRK A    N+
Sbjct: 268 RNVVCNYTLPLHIDLRKLAMNTHNV 292


>Z49910-7|CAA90124.4|  384|Caenorhabditis elegans Hypothetical
           protein F44G4.1 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +3

Query: 123 ETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260
           ++    P KK+K    +++KQEL++   K+  +EL ++++ ++  A
Sbjct: 43  DSDEDEPPKKKKKVVKKEIKQELELTDEKL--QELLEKYEASKATA 86


>Z48716-1|CAA88601.1|  482|Caenorhabditis elegans Hypothetical
           protein F59B10.2 protein.
          Length = 482

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 123 ETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT*KETA 302
           + ++KP  K+ KP D+   K+   I Y    P +L  R   + K    +++  RT +E+ 
Sbjct: 296 QKTKKPDKKRAKPDDIRQNKKPEPIPYEDFIP-KLSSRSSNSEKS--TVRETNRTLEESL 352

Query: 303 PMLLHHLNK 329
              L  +NK
Sbjct: 353 KKTL-KINK 360


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 114 KMGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEE 224
           K  +  R+   K++KPG++E+ +Q  +  Y   TP++
Sbjct: 801 KTEDLLREERQKEQKPGEIEEPQQPAESLYSTRTPQQ 837


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  REAACSFYPPVHRDLRKWARQAENL 141
           R   C++  P+H DLRK A    N+
Sbjct: 268 RNVVCNYTLPLHIDLRKLAMNTHNV 292


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  REAACSFYPPVHRDLRKWARQAENL 141
           R   C++  P+H DLRK A    N+
Sbjct: 268 RNVVCNYTLPLHIDLRKLAMNTHNV 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,626,073
Number of Sequences: 27780
Number of extensions: 171765
Number of successful extensions: 575
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)