Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1081
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 30 0.50
At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative ... 29 0.87
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ... 29 1.2
At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putati... 27 2.7
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 3.5
At1g71360.1 68414.m08237 expressed protein low similarity to PIR... 27 3.5
At2g36580.1 68415.m04486 pyruvate kinase, putative similar to py... 26 6.1
At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containi... 26 8.1
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to... 26 8.1
At3g07730.1 68416.m00933 expressed protein 26 8.1
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ... 26 8.1
At1g50460.1 68414.m05656 hexokinase, putative similar to hexokin... 26 8.1
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +3
Query: 147 KKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQKRKRT*KETAPML 311
+KR DLE+ K++ + Y + EE+ +FK T + + ++ +T E P++
Sbjct: 908 EKRMRTDLEEAKKQENAKYES-SLEEIQNKFKETEALLIKEREAAKTVSEVLPII 961
>At4g11730.1 68417.m01871 ATPase, plasma membrane-type, putative /
proton pump, putative similar to plasma membrane-type
ATPase SP|P20431 and SP|P19456 {Arabidopsis thaliana};
contains InterPro accession IPR001757: ATPase, E1-E2
type
Length = 813
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 162 GD-LEDLKQELDIDYHKVTPEELYQRFKRTRK 254
GD LED+K E+D D K+ EE++++ + +R+
Sbjct: 4 GDSLEDIKIEIDDDLEKIPIEEVFKKLRCSRE 35
>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 809
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 133 ENLPRKNGNQEI*KISNRSWILITIK-SLLRNSTKDLNAPGKW 258
ENL RK N EI + + W L TI SLL ST DL + KW
Sbjct: 499 ENLERKRLNLEILENTFPDWCLNTINASLLSISTDDLFS-SKW 540
>At1g23190.1 68414.m02897 phosphoglucomutase, cytoplasmic, putative
/ glucose phosphomutase, putative strong similarity to
SP|P93805 Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)
(Glucose phosphomutase 2) (PGM 2) {Zea mays}; contains
InterPro accession IPR006352: Phosphoglucosamine mutase
Length = 583
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 89 IRLYIETYENGRDKQKTSREKTE 157
IRLYIE YE +D KT RE E
Sbjct: 535 IRLYIEQYE--KDASKTGRESQE 555
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 13 LLITRAVPPCTVEGYRRDREAACSFYPP-VHRDLRK 117
+L+ P T E +R+ ++AC +PP V R + K
Sbjct: 284 VLVNEEKPKKTTESFRKTSDSACVVFPPKVFRIMEK 319
>At1g71360.1 68414.m08237 expressed protein low similarity to
PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
Length = 459
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 156 KPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMALVMQK 275
K DLE K+E +++ ++ E + +R + T+K A+ M+K
Sbjct: 332 KEMDLEASKREKEVETMRLEVEGMKEREENTKKEAMEMRK 371
>At2g36580.1 68415.m04486 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Glycine max]
SWISS-PROT:Q42806
Length = 527
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 192 DIDYHKVTPEELYQRFKRTRKMALVM 269
D DYH+ T E L K T+K+ VM
Sbjct: 65 DADYHQETLENLKIAVKSTKKLCAVM 90
>At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 730
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 120 GETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQ 233
G S K KP DL+ L+ +HK+TP +LY+
Sbjct: 50 GTDSANEWEKLLKPFDLDSLRNS----FHKITPFQLYK 83
>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
Length = 639
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 84 LLSACT*RLTK-MGETSRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260
+L A +L K + E + K +KR D+E+ K + + EE+ +FK T+ +
Sbjct: 15 VLEAAKSKLEKQVEELTWKLQLEKRMRTDMEESKTQENAKLRSAL-EEMQLQFKETKALH 73
Query: 261 LVMQKRKRT*KETAPML 311
L + + ET P+L
Sbjct: 74 LQEVEAAKKMAETVPVL 90
>At3g07730.1 68416.m00933 expressed protein
Length = 473
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 129 SRKPPAKKRKPGDLEDLKQELDIDYHKVTPEELYQRFKRTRKMA 260
+R +KR+ +LE K D+ + E++ QR + RK++
Sbjct: 125 NRVAERRKRRIAELEAAKTSRDVPSLETQQEDIQQRDNKVRKLS 168
>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
profiles PF04677: Protein similar to CwfJ N terminus 1,
PF04676: Protein similar to CwfJ N terminus 2
Length = 692
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +3
Query: 114 KMGETSRKPPAKKRKP---GDLEDLKQELDIDYHKVTPEEL 227
KMG PP +K P D+ED +E + KV P EL
Sbjct: 77 KMGLDWMLPPTRKADPNPASDVEDKFEESAPEVTKVNPREL 117
>At1g50460.1 68414.m05656 hexokinase, putative similar to hexokinase
1 [Spinacia oleracea] Swiss-Prot:Q9SEK3
Length = 498
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Frame = +2
Query: 29 QSHPAPLRDTDETERRLVPFIRL----YIETYENGRDKQKTSREKTETRRF 169
+ HP P + T L F+ +IE ENG D Q RE T F
Sbjct: 127 ERHPIPSHLMNSTSEVLFNFLAFSLERFIEKEENGSDSQGVRRELAFTFSF 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,269
Number of Sequences: 28952
Number of extensions: 166151
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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