BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1079 (452 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 27 1.0 SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 25 7.2 SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 7.2 SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 24 9.5 SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 24 9.5 >SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 27.5 bits (58), Expect = 1.0 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +3 Query: 258 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 425 EE ED G + CT + N + + D +E + GP E++ M+ DV Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274 >SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 24.6 bits (51), Expect = 7.2 Identities = 9/30 (30%), Positives = 18/30 (60%) Frame = +3 Query: 282 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 371 D +++++C+F+ LK + P+ VTY Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342 >SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non catalytic subunit Arm1|Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 24.6 bits (51), Expect = 7.2 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 220 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 122 +E T +YS+ SL + G ALA L ++ TP+ Sbjct: 7 KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39 >SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual Length = 918 Score = 24.2 bits (50), Expect = 9.5 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = -1 Query: 83 PCISCLRIPFL*INFIDLRERFLMRLF 3 P ++C+ IP + + RFL+ LF Sbjct: 823 PILTCISIPLFSFEPLSKKNRFLINLF 849 >SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1019 Score = 24.2 bits (50), Expect = 9.5 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +1 Query: 316 KAIPSSKSRRPPTVLKSLTS 375 K +P+S+S PP +L SL + Sbjct: 995 KVVPNSQSANPPRLLASLNN 1014 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,760,522 Number of Sequences: 5004 Number of extensions: 33347 Number of successful extensions: 96 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -