Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1079
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.0  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   7.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    24   9.5  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 258 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 425
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 371
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 220 EEVTKLYSSPSLRSSTVGVTALAALRVIRPTPM 122
           +E T +YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 83  PCISCLRIPFL*INFIDLRERFLMRLF 3
           P ++C+ IP      +  + RFL+ LF
Sbjct: 823 PILTCISIPLFSFEPLSKKNRFLINLF 849


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 316  KAIPSSKSRRPPTVLKSLTS 375
            K +P+S+S  PP +L SL +
Sbjct: 995  KVVPNSQSANPPRLLASLNN 1014


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,522
Number of Sequences: 5004
Number of extensions: 33347
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)