Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1079
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 2.3
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 28 3.1
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 27 5.3
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 27 5.3
10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628... 27 7.1
09_03_0081 + 12163213-12164088 27 7.1
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 27 7.1
07_03_1455 - 26659480-26659758,26659907-26660149 27 9.3
04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581 27 9.3
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 9.3
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 171 TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEED 275
T +L+K+ DEY + ++S + TE K ++FEE+
Sbjct: 477 TAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 134 THADGLHELIKVLGGSHP--CISCLRI 60
++ LHE+ + GSHP CIS LRI
Sbjct: 673 SNGGSLHEVAHIANGSHPRNCISLLRI 699
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 344 LLDLLEGIAFECAYGFHL--STVSAVLFELFA 255
L+D+L G+ + +GFHL S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 446 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGG 345
L+D+ +HL +FPDV FK V G
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLG 531
>10_08_0308 +
16660751-16661450,16661656-16661819,16662615-16662800,
16663297-16663533
Length = 428
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 122 HRRGSDHPQSRQRCHPDRGAP 184
HRRG RQRC RGAP
Sbjct: 87 HRRGPSLVPGRQRCGGARGAP 107
>09_03_0081 + 12163213-12164088
Length = 291
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 296 EIRMHIRRQYPQASPEGPR 352
+ R+H++RQ QA P GPR
Sbjct: 66 QARLHLQRQAAQAGPLGPR 84
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 176 HGRGDSVGGFAGDQTHADGLH 114
HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 171 TVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 272
TV LR E L+TSS TE K GEEF++
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKK 153
>04_04_0657 + 27000894-27001094,27001188-27001544,27002387-27002581
Length = 250
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 258 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVRE 380
E+F D A A S F+G L Q+ PDG RE
Sbjct: 167 EDFLVDEATAASSSSDGLFQGGLLAQIGGVPDGYAAWAGRE 207
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 113 HEDHRRGSDHPQSRQRCHPDR 175
H HRRG H Q + HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,962
Number of Sequences: 37544
Number of extensions: 242844
Number of successful extensions: 676
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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