Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1079
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1) 29 1.4
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 3.1
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_56218| Best HMM Match : DUF1627 (HMM E-Value=4.1) 28 4.2
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 4.2
SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 28 4.2
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.2
SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_1421| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 4.2
SB_58625| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 4.2
SB_53768| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 4.2
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 4.2
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 4.2
SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 4.2
SB_24414| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 4.2
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 4.2
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 4.2
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 9.6
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 9.6
>SB_42588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 255 GEEFEEDRADGAKVKSVCTFEGNTLK 332
G+E E+D DG+K S CTFEG T++
Sbjct: 25 GDEHEKDLRDGSKRISGCTFEGITMQ 50
>SB_20198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 207 LVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFG 386
L T K+ ++++ P + E+ D V+ VC + P G+E YV EF
Sbjct: 119 LAPLGTDKSAQIRYAPVKVIEQKENDQLLVQPVCYMDA--------IPVGVEDGYVHEFI 170
Query: 387 PEEMKAVMTAKDVTCT 434
P+E + + T T
Sbjct: 171 PDEYLTASSVRGSTLT 186
>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
Length = 1156
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +3
Query: 132 GLITRKAANAVTPTVELRKDGDEYNLVTS---STFKTTEMKFKPGEEFEEDRADGAKVKS 302
GL+ A+ V+ T+ R+ GD + +S S + TE +E DG
Sbjct: 322 GLVKGSASRRVSNTLHTRRQGDARDPTSSWPPSWIRVTE---------DEGAEDGGHELR 372
Query: 303 VCTFEGNTLKQVQKAPDGLEV 365
VC FEG + ++ P +EV
Sbjct: 373 VCVFEGFSRQKQHLKPTAMEV 393
>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 148 KPPTLSPRPWSSVRMVTNTI 207
KP L P PW VR+ TN I
Sbjct: 56 KPNPLGPEPWYKVRLPTNVI 75
>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 854
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 148 KPPTLSPRPWSSVRMVTNTI 207
KP L P PW VR+ TN I
Sbjct: 81 KPNPLGPEPWYKVRLPTNVI 100
>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 550 FRFNQRMQEPGESYEHYRTALGKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 609
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 610 KLTLAKTDEIC 620
>SB_56218| Best HMM Match : DUF1627 (HMM E-Value=4.1)
Length = 301
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 81 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 140
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 141 KLTLAKTDEIC 151
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIRDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_44711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 714
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 180 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 239
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 240 KLTLAKTDEIC 250
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 168 PTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
P +L ++GDE + T KTTE K G+ +R+ VK
Sbjct: 46 PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89
>SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 319
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 41 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 100
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 101 KLTLAKTDEIC 111
>SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 377
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 47 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 106
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 107 KLTLAKTDEIC 117
>SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 272
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 45 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 104
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 105 KLTLAKTDEIC 115
>SB_1421| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 212
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_58625| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 212
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_53768| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 212
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 45 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 104
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 105 KLTLAKTDEIC 115
>SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 351
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 345 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 404
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 405 KLTLAKTDEIC 415
>SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 519
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 606
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_24414| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 212
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 45 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 104
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 105 KLTLAKTDEIC 115
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 FKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEM 398
F+ + +PGE +E R K+ C F+ T ++ + G+ T VRE E
Sbjct: 99 FRFNQRMQEPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRES 158
Query: 399 KAVMTAKDVTC 431
K + D C
Sbjct: 159 KLTLAKTDEIC 169
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 208 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 119
+L+ SP+LRS +G+ +AL+ + P MV
Sbjct: 13 RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41
>SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 292
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 249 KPGEEFEEDRADGAKVKSVCTFEGNTLKQV--QKAPDGLEVTYVREFGPEEMKAVMTAKD 422
+PGE +E R K+ C F+ T ++ + G+ T VRE E K + D
Sbjct: 3 EPGESYEHYRTALRKLAESCEFDTITPDEILRDRLLFGIHDTKVRERLLRESKLTLAKTD 62
Query: 423 VTC 431
C
Sbjct: 63 EIC 65
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 176 HGRGDSVGGFAGDQTHADG 120
HG GD GG GD H DG
Sbjct: 390 HGGGDHGGGDYGDGDHGDG 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,278
Number of Sequences: 59808
Number of extensions: 260510
Number of successful extensions: 739
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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