Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1079
         (452 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p pro...   129   1e-30
BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p pro...   127   6e-30
BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p pro...   127   6e-30
AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB...   127   6e-30
AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC...   113   1e-25
BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p pro...   108   4e-24
BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p pro...   108   4e-24
AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA...   108   4e-24
AY089569-1|AAL90307.1|  168|Drosophila melanogaster RE04580p pro...    27   8.9  
AE014298-2796|AAF48913.1|  168|Drosophila melanogaster CG7406-PA...    27   8.9  

>BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p
           protein.
          Length = 142

 Score =  129 bits (312), Expect = 1e-30
 Identities = 63/137 (45%), Positives = 88/137 (64%)
 Frame = +3

Query: 36  YKVNL*KWNS*ARNTRMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVT 215
           ++ N+ K +   +  ++  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T
Sbjct: 6   HRPNIPKMSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTT 65

Query: 216 SSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEE 395
           +STFKT+ + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E
Sbjct: 66  TSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNE 123

Query: 396 MKAVMTAKDVTCTRVYK 446
           +   +T  +V C RVYK
Sbjct: 124 LITTLTIGNVKCVRVYK 140


>BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p
           protein.
          Length = 130

 Score =  127 bits (307), Expect = 6e-30
 Identities = 61/122 (50%), Positives = 81/122 (66%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           ++  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G 
Sbjct: 9   KLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGV 68

Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRV 440
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 441 YK 446
           YK
Sbjct: 127 YK 128


>BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p
           protein.
          Length = 130

 Score =  127 bits (307), Expect = 6e-30
 Identities = 61/122 (50%), Positives = 81/122 (66%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           ++  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G 
Sbjct: 9   KLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGV 68

Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRV 440
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 441 YK 446
           YK
Sbjct: 127 YK 128


>AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB,
           isoform B protein.
          Length = 130

 Score =  127 bits (307), Expect = 6e-30
 Identities = 61/122 (50%), Positives = 81/122 (66%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           ++  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G 
Sbjct: 9   KLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGV 68

Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRV 440
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T  +V C RV
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRV 126

Query: 441 YK 446
           YK
Sbjct: 127 YK 128


>AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC,
           isoform C protein.
          Length = 157

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/106 (50%), Positives = 72/106 (67%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           ++  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G 
Sbjct: 9   KLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGV 68

Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEM 398
           EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+
Sbjct: 69  EFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNEL 112


>BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p
           protein.
          Length = 117

 Score =  108 bits (259), Expect = 4e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p
           protein.
          Length = 117

 Score =  108 bits (259), Expect = 4e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA,
           isoform A protein.
          Length = 117

 Score =  108 bits (259), Expect = 4e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>AY089569-1|AAL90307.1|  168|Drosophila melanogaster RE04580p
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 197 VTILTELHGRGDSVGGFAGDQTHADGLHELIKVL---GGSH 84
           V +++E  G G   GG++G   HA    +++KV+   G SH
Sbjct: 46  VKVISEEAGHGGWAGGYSGGYAHAPEEVKIVKVISEAGHSH 86


>AE014298-2796|AAF48913.1|  168|Drosophila melanogaster CG7406-PA
           protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 197 VTILTELHGRGDSVGGFAGDQTHADGLHELIKVL---GGSH 84
           V +++E  G G   GG++G   HA    +++KV+   G SH
Sbjct: 46  VKVISEEAGHGGWAGGYSGGYAHAPEEVKIVKVISEAGHSH 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,514,677
Number of Sequences: 53049
Number of extensions: 387227
Number of successful extensions: 1179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)