Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1079
(452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 90 6e-19
Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical pr... 90 8e-19
AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding... 84 5e-17
AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding... 84 5e-17
AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding... 83 7e-17
Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical pr... 75 3e-14
U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding p... 40 6e-04
U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding p... 40 6e-04
U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding p... 38 0.003
U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding p... 36 0.018
U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding p... 34 0.042
U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical pr... 33 0.097
U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical pr... 33 0.097
U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical pr... 33 0.097
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 29 1.6
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 4.8
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 4.8
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical... 27 4.8
Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z70311-12|CAA94381.3| 418|Caenorhabditis elegans Hypothetical p... 27 8.4
Z70306-7|CAA94327.3| 418|Caenorhabditis elegans Hypothetical pr... 27 8.4
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 90.2 bits (214), Expect = 6e-19
Identities = 43/88 (48%), Positives = 58/88 (65%)
Frame = +3
Query: 81 RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
++ SENF+E+MK +GVGLITRKAA + PT+E++ +GD + STFK T + FK G+
Sbjct: 10 KLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLGQ 69
Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQK 344
EF+E DG VKSV FE +QK
Sbjct: 70 EFDETTPDGRTVKSVVNFENGKFIHIQK 97
>Z81127-2|CAB03387.1| 137|Caenorhabditis elegans Hypothetical
protein T22G5.2 protein.
Length = 137
Score = 89.8 bits (213), Expect = 8e-19
Identities = 51/124 (41%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +3
Query: 81 RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
++ +ENFDE+MK IGVGLITRKAA + P +E+R DG+ +N STFK T++ FK GE
Sbjct: 12 KLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKLSFKLGE 71
Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT--AKDVTCT 434
EF E+ D S+ TFE L Q + V E K + T + DV C
Sbjct: 72 EFVENSPDDRTYNSLFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQSGDVICR 131
Query: 435 RVYK 446
R ++
Sbjct: 132 REWE 135
>AC024771-9|ABA61863.1| 137|Caenorhabditis elegans Lipid binding
protein protein 9,isoform b protein.
Length = 137
Score = 83.8 bits (198), Expect = 5e-17
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 90 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFE 269
SSENFDE++K +GVG R A P +E +GDE+ + ++STFK +K+K G +
Sbjct: 15 SSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASD 74
Query: 270 EDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 446
E ADG V SV + E + L Q++ G + + + + ++ V T V CTRVY+
Sbjct: 75 EKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 134
>AC024771-8|AAK70656.1| 152|Caenorhabditis elegans Lipid binding
protein protein 9,isoform a protein.
Length = 152
Score = 83.8 bits (198), Expect = 5e-17
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +3
Query: 90 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFE 269
SSENFDE++K +GVG R A P +E +GDE+ + ++STFK +K+K G +
Sbjct: 30 SSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASD 89
Query: 270 EDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 446
E ADG V SV + E + L Q++ G + + + + ++ V T V CTRVY+
Sbjct: 90 EKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 149
>AF003141-5|AAK21486.1| 136|Caenorhabditis elegans Lipid binding
protein protein 5 protein.
Length = 136
Score = 83.4 bits (197), Expect = 7e-17
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Frame = +3
Query: 81 RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
++ SENF++++K +GVGL+ RKAA A PT+E++ +G+++++ STFK T ++F G
Sbjct: 11 KLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFTLGV 70
Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMTAKDVTCT 434
EF+E DG + KS T E + VQK + R F E++ + + V
Sbjct: 71 EFDETTPDGRQFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQSGSVISR 130
Query: 435 RVY 443
R Y
Sbjct: 131 RAY 133
>Z81127-7|CAB03391.2| 137|Caenorhabditis elegans Hypothetical
protein T22G5.6 protein.
Length = 137
Score = 74.5 bits (175), Expect = 3e-14
Identities = 34/79 (43%), Positives = 52/79 (65%)
Frame = +3
Query: 81 RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
++ SENF+E++K IGVGL+ RKAA+ +PT+E++ DGD ++ STFK ++ FK E
Sbjct: 12 KLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNKLAFKIRE 71
Query: 261 EFEEDRADGAKVKSVCTFE 317
+F E D ++ TFE
Sbjct: 72 KFVEIAPDERSYNTLVTFE 90
>U40420-6|ABD63223.1| 150|Caenorhabditis elegans Lipid binding
protein protein 3,isoform b protein.
Length = 150
Score = 40.3 bits (90), Expect = 6e-04
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = +3
Query: 93 SENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSSTFKTTEMK-FKPGEE 263
SENFDEF+ GV R+ + L K+ +YN+ ++ K T ++ G+
Sbjct: 21 SENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTSKKNTLYHGWELGKT 80
Query: 264 FEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPEEMKAVMTAKDVTCT 434
FE + DG K +F+ L + P+ TY +++ M +TC
Sbjct: 81 FEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIENDQLVMKMVNNGITCR 140
Query: 435 RVYK 446
R +K
Sbjct: 141 RWFK 144
>U40420-5|AAA81433.2| 165|Caenorhabditis elegans Lipid binding
protein protein 3,isoform a protein.
Length = 165
Score = 40.3 bits (90), Expect = 6e-04
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = +3
Query: 93 SENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSSTFKTTEMK-FKPGEE 263
SENFDEF+ GV R+ + L K+ +YN+ ++ K T ++ G+
Sbjct: 36 SENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTSKKNTLYHGWELGKT 95
Query: 264 FEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPEEMKAVMTAKDVTCT 434
FE + DG K +F+ L + P+ TY +++ M +TC
Sbjct: 96 FEAEGLDGVAHKITFSFKDGVLSEHHIRLNDPEHSAETYYYTIENDQLVMKMVNNGITCR 155
Query: 435 RVYK 446
R +K
Sbjct: 156 RWFK 159
>U64855-7|AAB04984.1| 145|Caenorhabditis elegans Lipid binding
protein protein 4 protein.
Length = 145
Score = 38.3 bits (85), Expect = 0.003
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Frame = +3
Query: 81 RMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSSTFKTTEMK-FK 251
++ SENFDEF+ + GV R+ +T + ++ +YN+ ++ K T + ++
Sbjct: 12 QLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLTSKKNTNYQAWE 71
Query: 252 PGEEFEEDRADGAKVKSVCTFEGNTLKQVQ---KAPDGLEVTYVREFGPEEMKAV-MTAK 419
G++FE DG + + F+ L + P+ TY + + M
Sbjct: 72 LGKKFEAPGLDGNQHEITFDFKDEILSEHHIRLNEPETSAETYFYTIDDQNQLVMRMENN 131
Query: 420 DVTCTRVYK 446
+ C R +K
Sbjct: 132 GIVCRRWFK 140
>U40420-7|AAA81434.1| 159|Caenorhabditis elegans Lipid binding
protein protein 1 protein.
Length = 159
Score = 35.5 bits (78), Expect = 0.018
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Frame = +3
Query: 93 SENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP---GEE 263
SENFDE++ G G TRK T K ++ S+ ++ +K G+
Sbjct: 33 SENFDEYLTAKGYGWFTRKLVTFATFKKVFTKTSNKNLFDYSNLTSKKDVHYKNVQLGKA 92
Query: 264 FEEDRADGAKVKSVCTFEGNTLKQVQK---APDGLEVTYVREFGPEEMKAVMTAKDVTCT 434
F+ + D K + T + L + K D E TY F E + M+ V
Sbjct: 93 FQGEGLDSTKHEITFTLKDGHLFEHHKPLEGGDAKEETYEYLFDKEFLLVRMSFNGVEGR 152
Query: 435 RVYK 446
R YK
Sbjct: 153 RFYK 156
>U40420-8|AAA81435.1| 161|Caenorhabditis elegans Lipid binding
protein protein 2 protein.
Length = 161
Score = 34.3 bits (75), Expect = 0.042
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Frame = +3
Query: 93 SENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKF----KPGE 260
SENFDE++ G G TRK T K+ ++ NL S + + F + G
Sbjct: 35 SENFDEYLTAKGYGWFTRKLVTFATFKKVFAKNANK-NLFDYSNLTSKKDVFYKNVQIGS 93
Query: 261 EFEEDRADGAKVKSVCTF-EGNTLKQVQKAPDG--LEVTYVREFGPEEMKAVMTAKDVTC 431
+FE + D K + T +G+ + + +G E TY F + + M+ ++
Sbjct: 94 KFEGEGLDNTKHEVTFTLKDGHLFEHHKPLEEGESKEETYEYYFDGDFLIQKMSFNNIEG 153
Query: 432 TRVYK 446
R YK
Sbjct: 154 RRFYK 158
>U28991-8|AAM22060.1| 517|Caenorhabditis elegans Hypothetical
protein F08F8.9c protein.
Length = 517
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 90 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 254
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-7|AAK68312.1| 626|Caenorhabditis elegans Hypothetical
protein F08F8.9a protein.
Length = 626
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 90 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 254
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>U28991-6|AAK68313.1| 624|Caenorhabditis elegans Hypothetical
protein F08F8.9b protein.
Length = 624
Score = 33.1 bits (72), Expect = 0.097
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 90 SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKP 254
SSE ++ + IGV L RK +A P DG+ V +ST K E K KP
Sbjct: 2 SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKP 56
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 144 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 272
+ A + TP D+ + T++T TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 244 FISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 104
F S++ K VT S +L SST + +A+ I PT +F NSS
Sbjct: 845 FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +3
Query: 135 LITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTF 314
+IT+ ++ V+ +EL+ +EY L+ F + K ++ +E A K+ F
Sbjct: 230 IITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKAKESLAKYQKMYCSALF 289
Query: 315 EGNTLKQVQKAPDGLE 362
+K + AP LE
Sbjct: 290 NYCQIKYKKAAPARLE 305
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 114 MKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAK 293
+K + G I +K + P + + +DG Y K ++FK E FE+ +
Sbjct: 241 IKVLPAGKIEKKLIKELNPEMMVGRDGRRYRQKLREAEKQATVEFKL-ENFEQTNGEAQS 299
Query: 294 VKS 302
V++
Sbjct: 300 VEN 302
>AF039048-13|AAB94231.1| 440|Caenorhabditis elegans Hypothetical
protein F16B4.11 protein.
Length = 440
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 123 IGVGLITRKAANAVTPTVELRKDGDEYNL 209
+ + L+ KA N + V +RKDGD NL
Sbjct: 166 VDISLLVDKATNYILNPVLIRKDGDMSNL 194
>Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical
protein K05D4.3 protein.
Length = 321
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 229 LKVEEVTKLYSSPSLRSSTVGVTALAALRV 140
LK V KL+ P +SS VGV A +R+
Sbjct: 286 LKSRNVFKLFCCPFSKSSQVGVVAQPVMRI 315
>Z70311-12|CAA94381.3| 418|Caenorhabditis elegans Hypothetical
protein T25B9.10 protein.
Length = 418
Score = 26.6 bits (56), Expect = 8.4
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +3
Query: 138 ITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFE 317
IT K V T EL + T FK +KF P +FE D D K + +F
Sbjct: 289 ITEKTFRDVFETEELASHRKKQLAFTD--FKEAPIKFPPTHKFEPD-TDNYVPKRIPSFT 345
Query: 318 GNTLKQVQKAP--DGLEVTYVREFGPEEMKAV 407
L V+ + ++ +R P + KAV
Sbjct: 346 DRVLFWVRNSEWLQNIQYDCMRGTTPSDHKAV 377
>Z70306-7|CAA94327.3| 418|Caenorhabditis elegans Hypothetical
protein T25B9.10 protein.
Length = 418
Score = 26.6 bits (56), Expect = 8.4
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +3
Query: 138 ITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVKSVCTFE 317
IT K V T EL + T FK +KF P +FE D D K + +F
Sbjct: 289 ITEKTFRDVFETEELASHRKKQLAFTD--FKEAPIKFPPTHKFEPD-TDNYVPKRIPSFT 345
Query: 318 GNTLKQVQKAP--DGLEVTYVREFGPEEMKAV 407
L V+ + ++ +R P + KAV
Sbjct: 346 DRVLFWVRNSEWLQNIQYDCMRGTTPSDHKAV 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,612
Number of Sequences: 27780
Number of extensions: 193625
Number of successful extensions: 576
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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