Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1079
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...   147   6e-38
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    66   1e-13
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    52   2e-09
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   2.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   2.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score =  147 bits (356), Expect = 6e-38
 Identities = 70/124 (56%), Positives = 89/124 (71%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           ++ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE+KFK GE
Sbjct: 10  KLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGE 69

Query: 261 EFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRV 440
           EFEE+  DG KVKSVCT +GN L QVQK     + T  REF   EMKA+M   D+ CTRV
Sbjct: 70  EFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIMKVDDIICTRV 127

Query: 441 YKVQ 452
           YK+Q
Sbjct: 128 YKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 66.5 bits (155), Expect = 1e-13
 Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           +  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T    FK   
Sbjct: 9   QFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYTKTFKMNV 67

Query: 261 EFEE--DRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKA-VMTAK-DVT 428
            FEE        K ++V + EGNT K   +  D L+VT + EF   E+   + T K DV 
Sbjct: 68  PFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTNKSDVK 127

Query: 429 CTRVYK 446
            TRVYK
Sbjct: 128 ATRVYK 133


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 52.4 bits (120), Expect = 2e-09
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +3

Query: 81  RMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGE 260
           +  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T    FK   
Sbjct: 7   QFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYTKTFKMNV 65

Query: 261 EFEE--DRADGAKVKSVCTFEGNTLKQVQKAPDGLEVT 368
            FEE        K ++V + EGNT K   +  D L+VT
Sbjct: 66  PFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVT 103


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 244 FISVVLKVEEVTKLYSSPSLRSSTV 170
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 306 CTFEGNTLKQVQKAPDGL 359
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 306 CTFEGNTLKQVQKAPDGL 359
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 306 CTFEGNTLKQVQKAPDGL 359
           CT EGN LK+V   PD L
Sbjct: 57  CTAEGNELKRV--LPDAL 72


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 114 MKTIGVGLITRKAANAVTPTVELRKDGDEYN 206
           MKTI  G    +    V    E  K G EY+
Sbjct: 513 MKTIKKGSFVTQYVGEVITNEEAEKRGKEYD 543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,963
Number of Sequences: 438
Number of extensions: 2132
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)