Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1079
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    29   1.9  
At3g19890.1 68416.m02518 F-box family protein contains F-box dom...    27   5.9  
At2g17550.1 68415.m02031 expressed protein                             27   5.9  
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain...    27   7.8  
At4g03480.1 68417.m00475 ankyrin repeat family protein contains ...    27   7.8  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   7.8  

>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 72  RNTRMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFK 251
           + TR     N  +  +T+G  +  +K  N     VEL +D     L   S+ K    K +
Sbjct: 2   KETRKLKKSNLPK-EETVGKKIQRKK--NEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQ 58

Query: 252 PGEEFEEDRADG 287
            G+E +   ADG
Sbjct: 59  KGKEIKSSPADG 70


>At3g19890.1 68416.m02518 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 174 VELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKV 296
           VE+RKD     LV SS++  +  K    EE EED+    K+
Sbjct: 354 VEVRKDVYRSALVCSSSYVPSLEKINQIEEEEEDKCKSIKM 394


>At2g17550.1 68415.m02031 expressed protein
          Length = 765

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/85 (18%), Positives = 33/85 (38%)
 Frame = +3

Query: 90  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFE 269
           + + F +  + +  G +  +  N        R  G ++ L +  T  T  +  +PG +  
Sbjct: 178 ADKRFKDCSRIVDSGCVVARDENKERLFTRTRSFGRDFTLKSDRTAPTRIVVLRPGLQRA 237

Query: 270 EDRADGAKVKSVCTFEGNTLKQVQK 344
            D  D     S  T EG+    +++
Sbjct: 238 YDYEDSLTTSSGTTMEGSRGSSIEE 262


>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein predicted proteins,
           Arabidopsis thaliana and Drosophila melanogaster
           contains Pfam profile PF00564: PB1 domain
          Length = 531

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 219 STFKTTEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYV 374
           S+ ++ +++F+    +E+ +    KVK +C++ G    ++Q  P   ++TYV
Sbjct: 15  SSPRSRDVEFENPSPWEDQQQQNYKVKLMCSYGG----KIQPRPHDNQLTYV 62


>At4g03480.1 68417.m00475 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 617

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 299 IRMHIRRQYPQASPEGPRRS*SHLRQGIRP 388
           +R H+ R  P+ASP  P  S S+ R  + P
Sbjct: 2   VRSHLLRATPEASPLKPASSPSNCRLSLSP 31


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +3

Query: 189 DGDEYNLVTSSTFKTTEM-KFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEV 365
           DG E        F   E+ +  P    E D  D   +   CTF+G      +K  D L +
Sbjct: 156 DGSEKQYDILPDFSPAEVAELWPAFSGEHDNMDAQSLVK-CTFQGGRCSNEEKPVDRLLI 214

Query: 366 TYVREFGPEEMKAVMTAK 419
           T + E    +++A    K
Sbjct: 215 TLMSECIESDVQAQSVVK 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,396,312
Number of Sequences: 28952
Number of extensions: 186764
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)