Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1078
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0603 - 23580283-23580627,23580970-23581174,23581286-235814...    29   2.4  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    28   4.1  
09_02_0372 + 8070452-8071012,8071114-8071221                           28   5.5  
05_03_0505 + 14773210-14773506                                         28   5.5  
08_02_1084 - 24232968-24234779                                         27   9.6  
04_01_0421 - 5565494-5565592,5565898-5565984,5567164-5567253,556...    27   9.6  

>01_05_0603 -
           23580283-23580627,23580970-23581174,23581286-23581407,
           23581493-23581675
          Length = 284

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 171 SRPKGCSFCPERVSGGRSFHSLRRTPSSLR 82
           S P GCS CPE +  G+    ++ T +  R
Sbjct: 156 SSPHGCSLCPENMCKGKIIERIQATANGKR 185


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 77  EHRSDEGVRRRE*KERPPDTRSGQKEQPLGRER 175
           EH ++ G R R  K RPP  R+ + E P  R+R
Sbjct: 895 EHNAEVGARNRN-KMRPPVDRNDRIEDPHARKR 926


>09_02_0372 + 8070452-8071012,8071114-8071221
          Length = 222

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 59  PLAAIQEHRSDEGVRRRE*KERPPDTRSGQKEQPLGRER 175
           PLAA  E +SDE   + E K   P       E+PL  E+
Sbjct: 99  PLAAPMEEQSDEAFLQAEKKHANPPMEEQIDEEPLQEEK 137


>05_03_0505 + 14773210-14773506
          Length = 98

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 362 PDNRNTAIRRKKRTKEI*HNYCFHLIIIF 448
           P N + A+R+ KRT+E+ H++ F   ++F
Sbjct: 17  PPNGSGALRQCKRTEEVCHDFLFFSPLLF 45


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 53  YGPLAAIQEHRSDEGVRRRE*KERPPDTR-SGQKEQPLGRER 175
           YG  AA  +   + G   +E  ERPPD   SG  E+   RE+
Sbjct: 452 YGDDAASDQQYGEGGSHGKERAERPPDREWSGASERRREREK 493


>04_01_0421 -
           5565494-5565592,5565898-5565984,5567164-5567253,
           5567366-5567532,5567541-5567799
          Length = 233

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 162 KGCSFCPERVSGGRSFHSLRRTP-SSLRCSWIA 67
           KGC      VSGG S+  LRR P  SLR S +A
Sbjct: 14  KGCVLRVPSVSGGDSWGVLRRKPRQSLRNSGLA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,734,148
Number of Sequences: 37544
Number of extensions: 176747
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)