Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1078
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 28   5.6  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 27   7.4  
SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06)                   27   9.8  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    27   9.8  

>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 9   EALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDP 128
           E  K QIEN+K  AS++   L++   A R Y +++ + DP
Sbjct: 534 ETSKTQIENLKDGASLETAALNKRGTA-RRYQKQHNQRDP 572


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   EALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKN 122
           E  K QIEN+K  AS+    L++   A R   + N++N
Sbjct: 159 ETSKTQIENLKDGASLAAGALNKRGTARRNQKQHNQRN 196


>SB_13879| Best HMM Match : UIM (HMM E-Value=4.1e-06)
          Length = 290

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 74  QEHRSDEGVRRRE*KERPPDTRSGQK-EQPLGRE 172
           Q+   DE  RRRE +E    T  GQK ++PL R+
Sbjct: 176 QQQEEDEKRRRREEEELQRGTHDGQKIKEPLRRK 209


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 6   KEALKKQIENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPD 146
           +E LKK + + KYQ   +R  L +    M++ + E++++  L H  D
Sbjct: 310 EERLKKAVLSQKYQIQAERDQLIQEFTLMQQQLLEHQQHQEL-HKAD 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,535
Number of Sequences: 59808
Number of extensions: 211150
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)